Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0070 ATGAAACCCGCCATCCCCAAACCAGTTTTCCTCACTAAAGCCCAGCGTGAACAAGCAGCACTGGAACGCCGCCACAATCAAGTCGCCGCCAGTCACAAAAAAGAACTTCTCCTCCGCCCCTCTGATTCCGACCGCCGCAGTTACAGAGAACGTGATAGGGAAAGGGAAAGAGATAACAGAGATCGGGAACGAAGAAACCGCGATAGAGAGCGTGAAGAAGAGGATAAAGCTCGTGAACATGCTCGATCGGAGAAGCTAGCGGAACGAAAACGTGAGCAGGATCTTGAATCGATTAAGGAACAATACCTAGGTTCAAAAAAACCTAAAAAAAGGGTTATTAAACCTAGTGAGAAATTTCGATTTTCATTTGATTGGGAAAATACTGAAGATACTTCACGTGATAGGAATGATCTTTATGAAAACCCTCATACGGCTCAGCTTCTTTTTGGCCGAGGGTTTATCGCTGGAATGGATCGTCGTGAACAGAAGAAGCTTGCGGCAAAGCAGGAGAAAGAGATGAGGGATCAGATTAGGAAGAAGGATGGTGTGGAGGAGAAGCCTGAGGAGGCTGATGCTCAAAGGCGGAAAGAGGAGGCTGCTGATGCTTATGATGCTTTTGATATGAGGGTTGATCGTCATTGGAGTGAGAAGAATCTTGAGGAAATGCAGGAGAGGGATTGGCGTATTTTTAGGGAAGATTATAATATTTCGTATAAGGGTTCAAAGATTCCGAGGCCTATTAGGAGTTGGGTTGAGAGTAAGTTGAGTCAAGAGATTTTGAAGGCTGTGGAGAAGGCTGGTTATAAAACCCCTTCACCGATTCAGATGGCTTCTATTCCGCTTGGACTTCAGCAACGCGATGTTATCGGTGTTGCTGAGACGGGTTCTGGGAAGACTGCTGCGTTTGTGCTGCCTATGTTGAGTTATATCACTAGGCTGCCGCCTATTAGTGAGGAGAATGAAGCTGAGGGTCCTTATGCTGTTGTTATGGCTCCGACTCGTGAGCTTGCTCAGCAGATTGAGGATGAGACCGTTAAATTTGCTCAGTATATGGGGATTAAAGTTGTTTCCATTGTCGGTGGTCAGTCTATTGAGGAGCAAGGGTTTAAGATAAGACAGGGTTGTGAAATTGTGATTGCGACTCCTGGTCGTTTGATTGATTGCTTGGAGCGTCGCTATGCGGTTCTTAATCAGTGTAATTATGTTGTTCTTGATGAAGCGGATCGAATGATTGATATGGGGTTTGAGCCGCAGGTCATGGGTGTGCTGGATGCTATGCCTTCGAGTAATCTCAAACCAGAGAATGAAGATGAGGAGCTTGATGAGAAGAGGATTTATAGGACTACTTATATGTTTAGTGCAACCATGCCTCCTGGTGTGGAGAGGCTTGCTAGAAAGTATTTGAGGAACCCTGTTGTGGTGACTATAGGTACTGCTGGAAAAGCAACTGACTTAATCAGTCAGCATGTGATCATGATGAAGGAATCTGAGAAAAACTATAACCTTCACAGATTGTTGGATCAGCTTAATGACAAGACTGCGATTGTGTTTGTCAACACCAAGAAGAGCGCTGATTTTCTTGCTAAGAATTTGGAAGGGTATCGCGTGACCACTTTGCACGGAGGGAAATCACAGGATCAGAGGGAAATTAGTCTTGAAGGATTTAGGACCAAGAGATATAATGTGCTTGTTGCAACCGATGTTGCTGGACGTGGTATTGACATTCCTGATGTGGCTCATGTTATCAACTATGATATGCCTGGGAATATTGAAATGTACACCCATCGTATTGGGCGTACCGGCCGTGCAGGAAAGACGGGTGTGGCTACAACATTCCTGACTCTTCAGGACACTGATGTCTTTTATGAACTTAAGCAGATGCTCATTCAGAGTAACAGTCCTGTTCCACATGAATTGGCAAGGCATGAAGCTTCCAAATTCAAGCCAGGATCTATTCCCGACAGACCACCTAGGCGAAACGACACTGTTTTTACCCATTAG 2001 0.4518 MKPAIPKPVFLTKAQREQAALERRHNQVAASHKKELLLRPSDSDRRSYRERDRERERDNRDRERRNRDREREEEDKAREHARSEKLAERKREQDLESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDRNDLYENPHTAQLLFGRGFIAGMDRREQKKLAAKQEKEMRDQIRKKDGVEEKPEEADAQRRKEEAADAYDAFDMRVDRHWSEKNLEEMQERDWRIFREDYNISYKGSKIPRPIRSWVESKLSQEILKAVEKAGYKTPSPIQMASIPLGLQQRDVIGVAETGSGKTAAFVLPMLSYITRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYMGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKNYNLHRLLDQLNDKTAIVFVNTKKSADFLAKNLEGYRVTTLHGGKSQDQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDTDVFYELKQMLIQSNSPVPHELARHEASKFKPGSIPDRPPRRNDTVFTH* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0070 666 MobiDBLite consensus disorder prediction 16 111 - -
Mtr6g0070 666 CDD DEADc_DDX23 259 475 - -
Mtr6g0070 666 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 403 411 IPR000629 -
Mtr6g0070 666 Gene3D - 209 478 IPR027417 -
Mtr6g0070 666 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 248 276 IPR014014 GO:0003724
Mtr6g0070 666 Pfam Helicase conserved C-terminal domain 502 604 IPR001650 -
Mtr6g0070 666 MobiDBLite consensus disorder prediction 634 666 - -
Mtr6g0070 666 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 501 643 IPR001650 -
Mtr6g0070 666 Gene3D - 479 663 IPR027417 -
Mtr6g0070 666 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 324 625 IPR027417 -
Mtr6g0070 666 MobiDBLite consensus disorder prediction 167 198 - -
Mtr6g0070 666 Pfam DEAD/DEAH box helicase 273 462 IPR011545 GO:0003676|GO:0005524
Mtr6g0070 666 Coils Coil 53 89 - -
Mtr6g0070 666 Coils Coil 159 186 - -
Mtr6g0070 666 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 279 474 IPR014001 -
Mtr6g0070 666 PANTHER - 11 659 - -
Mtr6g0070 666 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 11 659 - -
Mtr6g0070 666 SMART helicmild6 521 604 IPR001650 -
Mtr6g0070 666 MobiDBLite consensus disorder prediction 639 666 - -
Mtr6g0070 666 MobiDBLite consensus disorder prediction 17 107 - -
Mtr6g0070 666 SMART ultradead3 267 489 IPR014001 -
Mtr6g0070 666 CDD SF2_C_DEAD 486 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0070 Mtr-Chr6 720277 724803 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0070 255 653 Eukaryotic Initiation Factors Gene Family AT3G13920 33.085 6.68e-60 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0070 K12858 - gmx:100799264 1101.27