Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0060 ATGGCCTCAAGCTACTCAAATTCTCCATGTGCTGCTTGCAAGTTTCTAAGAAGAAAATGCAACCAAGATTGCATTTTTGCACCTTATTTCCCACCAGAAGAGCCTCATAAGTTTGCAAATGTTCACAAAATATTTGGTGCAAGTAATGTTAGCAAAATTCTAAATGAAGTTTTACCCCATCAAAGAGAAGATACGGTGAATTCTCTAGCTTATGAAGCTGAAGCAAGGATTAAAGATCCAGTGTATGGTTGTGTTGGAGCTATATCTGTGCTTCAAAGACAACTCCTTAAGCTTCAAAAGGAACTCGATGCTACAAATGCCGATTTGATTCGTTTAAATCATCAAGGTTCTTCTTCTCTTGGTCTTGGACATGTTCATTCTGATGGTTTTTTTAATTGTCCATCTAATTTGAGCAATGATTCTTGTGGGGATTCCTAG 438 0.3744 MASSYSNSPCAACKFLRRKCNQDCIFAPYFPPEEPHKFANVHKIFGASNVSKILNEVLPHQREDTVNSLAYEAEARIKDPVYGCVGAISVLQRQLLKLQKELDATNADLIRLNHQGSSSLGLGHVHSDGFFNCPSNLSNDSCGDS* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0060 145 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Mtr6g0060 145 Pfam Lateral organ boundaries (LOB) domain 9 105 IPR004883 -
Mtr6g0060 145 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 114 - -
Mtr6g0060 145 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 2 114 - -
Mtr6g0060 145 Coils Coil 88 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0060 Mtr-Chr6 598005 599849 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0060 3 121 AS2 family AT3G27650 77.236 1.36e-68 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr6g0060 LOB 6.3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0060 - - gmx:100788656 217.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0060 6 598005 599849 Mtr6g0060 6 598005 599849 ECH