Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0049 ATGGAATCACCCAAAAACGAACACATCATTGGAACCGGAGGTGAACAAAACGACGTCGGTAGAAACTATGAACACGAACATGAACAACAACATCATAACTCTCAATCCCTTACCGGTGATGGTGCTAGTCCTGGAAAGATATTCATAGGTGGTTTAGCGAGAGAAACAACCATTGCCCAATTTATCAAGCACTTTGGTAAATATGGTGAGATTACTGATTCGGTCATCATGAAGGACAGGAAAACTGGACAGCCTCGTGGATTTGGGTTTATTACTTATGCTGATCCATCTGTGGTTGATAAAGTCATCGAGGACTCTCATATCATCAATAGCAAACAAGTTGAGATTAAGCGGACTATACCAAGGGGAGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATATTTGTAGGTGGTATTCCTTCAAATGTGACTGAAGATGAATTTAGAGATTTTTTTACACGCTATGGAGAAGTCAAAGATCACCAAATAATGCGTGACCACTCTACTAATCGTTCACGTGGCTTTGGGTTTGTCACCTTTGACACTGAGGAAGCTGTTGATGATCTTCTATCTATGGGGAACAAGATTGAGTTTGCTGGCACTCAGGTGGAAATCAAGAAGGCTGAACCAAAGAAGGCAAATGCACCACCTCCATCATCCAAGCGCTACAATGACTCAAGGTCTTCATACGGCAGTGGTGGGTATGGAGATGCTTATGATGGATTTGGTGGCGGATTTGGTGGTGTTGGGGGTGGTTACAGCAGGTCTGGCAGTGCTTATGGTGGTAGAGGTGGTCCGTATGGTGGCTATGGAAGTGAGTTTGCTGGGTATGGTGGATATGCTGGAGCAATGGGGGGACCCTACAGAGGAGATCCTTCTCTAGCATATGCAGGTCGTTATGGTGGAAGCTTTAGAAGCAGCTATGATCTTAGTGGGTATGGCGGACCTGGTGAGAGTTATGGGGCTTATGGTGGTGCCGGTGCAGGTGCTGCTGCTGGCGGAGGTGGTTCTTCTGGTGCTGGTGCATATCAAAGTGGCTATGATGCTAGCCTTGGCGGTGGATATGGAGGAGCAGCTAGTGGAGCTTCTTTCTATGGAAGCAGAGGTGGATATGGTGGTGCTGGTCGATATCATCCGTATGGAAGATAG 1152 0.4618 MESPKNEHIIGTGGEQNDVGRNYEHEHEQQHHNSQSLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDSHIINSKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSMGNKIEFAGTQVEIKKAEPKKANAPPPSSKRYNDSRSSYGSGGYGDAYDGFGGGFGGVGGGYSRSGSAYGGRGGPYGGYGSEFAGYGGYAGAMGGPYRGDPSLAYAGRYGGSFRSSYDLSGYGGPGESYGAYGGAGAGAAAGGGGSSGAGAYQSGYDASLGGGYGGAASGASFYGSRGGYGGAGRYHPYGR* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0049 383 SUPERFAMILY RNA-binding domain, RBD 123 222 IPR035979 GO:0003676
Mtr6g0049 383 MobiDBLite consensus disorder prediction 1 42 - -
Mtr6g0049 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 121 IPR000504 GO:0003723
Mtr6g0049 383 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 383 - -
Mtr6g0049 383 Gene3D - 133 216 IPR012677 -
Mtr6g0049 383 SUPERFAMILY RNA-binding domain, RBD 36 123 IPR035979 GO:0003676
Mtr6g0049 383 Gene3D - 14 129 IPR012677 -
Mtr6g0049 383 SMART rrm1_1 134 207 IPR000504 GO:0003723
Mtr6g0049 383 SMART rrm1_1 46 117 IPR000504 GO:0003723
Mtr6g0049 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 113 IPR000504 GO:0003723
Mtr6g0049 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 135 204 IPR000504 GO:0003723
Mtr6g0049 383 MobiDBLite consensus disorder prediction 19 33 - -
Mtr6g0049 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 133 211 IPR000504 GO:0003723
Mtr6g0049 383 MobiDBLite consensus disorder prediction 208 229 - -
Mtr6g0049 383 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0049 Mtr-Chr6 443062 446721 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0049 45 201 Eukaryotic Initiation Factors Gene Family AT1G71770 27.168 9.28e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0049 K12741 - gmx:100793209 417.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0049 6 443062 446721 Mtr6g0049 6 443062 446721 ECH