Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0047 ATGGAGAAAGAGATTGTGGAAAATCTTTGGAATGGTGATAGTGAAGCTCAAATTCAAGCAGCAATGAAACTTAGTAGATTGTCCAATAAGCAAAAGCATAATTTGGCAGAAAGTGGAGTTATGGTTCCTCTTGTTTCCATGCTTCATTCTCAAAACTTTGAAGCCATAGAAGCTTCTCTTTGTGCTTTTCTCAGCCTATCCTTTGGCAGTGAAAGAAACAAGATTCGGATTGTAAGGTATGGAGTTTTACCAATTTTGCTGAACCTCCTCCATTGTGAAAGTCAGACGGTGATACAATTGTCAGTAGCAGCCATGTTAACGCTTTCTTCTTGCAAGAGAAATAAGGTAGCAATAGCTTCATCTGGTGCAGTTCAAATTCTGGTTGAACTTATCAATAATAGTAACATTGAAACTCAGTCTCAACTAGACACTATAGCTACTCTCCATAACCTCACATCCTGCCAAGAGATAATTCCATTGATTGCATCTTCTGGTGTTATATTCTCCTTGCTTGAACTTATCCACGACTCGGTAAAATCATCTCTATTGGTTGAGAAAGCGATAGGATTGCTAGAAAATATTGTTTCTTCATCAGAGAGTGCACTTTGTGAGGCTGCTAGTATCGGAGGAGCAATTCGGATACTGGTTGAGACAATTGAAGATGGATCTTCACTAGGAAAAGAGCATGCAGTTGGCATACTTCTGCTTATATGTCAAAGCTGCAGAGAAAAATATAGAGTATTGATTTTGACAGATGGGGTGATGCCAGGATTACTTCAGTTAACCGTCGATGGAACGTGGAGAGCCAAATCGACGGCTAGGGAATTGTTGTTGCTTCTGAGAGACTGCTCTAGTTATAGCTCGAGAAGTACACAAATTAATCACAAGCTTATAGAACAGATAATGGAAGAAATTGATACAGAAGGAGAGAAATTGACAGATACTACTTTGAGATTGGTAGAGGAGATGATTGCAAAGCTCAATACATAA 990 0.3899 MEKEIVENLWNGDSEAQIQAAMKLSRLSNKQKHNLAESGVMVPLVSMLHSQNFEAIEASLCAFLSLSFGSERNKIRIVRYGVLPILLNLLHCESQTVIQLSVAAMLTLSSCKRNKVAIASSGAVQILVELINNSNIETQSQLDTIATLHNLTSCQEIIPLIASSGVIFSLLELIHDSVKSSLLVEKAIGLLENIVSSSESALCEAASIGGAIRILVETIEDGSSLGKEHAVGILLLICQSCREKYRVLILTDGVMPGLLQLTVDGTWRAKSTARELLLLLRDCSSYSSRSTQINHKLIEQIMEEIDTEGEKLTDTTLRLVEEMIAKLNT* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0047 329 SUPERFAMILY ARM repeat 4 315 IPR016024 -
Mtr6g0047 329 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 122 166 IPR000225 GO:0005515
Mtr6g0047 329 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 81 123 IPR000225 GO:0005515
Mtr6g0047 329 PANTHER U BOX DOMAIN-CONTAINING 1 309 - -
Mtr6g0047 329 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 165 200 IPR000225 GO:0005515
Mtr6g0047 329 Gene3D - 206 305 IPR011989 -
Mtr6g0047 329 Pfam Kinesin-associated protein (KAP) 23 170 - -
Mtr6g0047 329 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 309 - -
Mtr6g0047 329 Gene3D - 3 205 IPR011989 -
Mtr6g0047 329 SMART arm_5 70 110 IPR000225 GO:0005515
Mtr6g0047 329 SMART arm_5 154 196 IPR000225 GO:0005515
Mtr6g0047 329 SMART arm_5 28 68 IPR000225 GO:0005515
Mtr6g0047 329 SMART arm_5 111 153 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0047 Mtr-Chr6 427369 429136 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0047 44 282 U-box Gene Family AT1G24330 32.099 3.43e-25 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0047 - - gmx:100778534 497.664