Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0028 ATGGTGAAACCAATATCTCTATCTCTAACCCATCATCTCCATTTCCTCACAACAACCTCTTCTTCCAGATTATTCCATCCATTCTCCACTCTCCGTTTCTTCTCCACAACCCCATACCCACTCCAATACGAACTCATCATCAACCGTCCCAATCTCCCCAAACCCACTCGAACCTCTAAACCCGAACCAACCCCACCTCAAAACTCCTCCCTCCAATCCTGGGCCAACGATAAATTAACCACTGAACCGGAATCAAACCGACCCGGTTCGTCAAAATTTGAACTTGATAACAATCTTGATAAATCCAAGAGAAAATACTATAACAAAAGGAGGAAGAGAATGTATGGGTCTGATTCCGATGATGATCATCGTCGTAACGAGGAACAATTGGTGGAGATGATACCGGAAGTTGTGGAGTTGAGGACTTTGCATAAGAGGGAAGAGGAATTGTATATGTATGATGCTTTTTGTTATCCTTGGGAGAAAGATAAGCATTATAAAATGGTGTATCAGTTGGAGAAAAAGTATTTTCCTAATCAGTGTTTGGATCAGGCTTTTTTGAAACCTGGTCAATCTAATTGTTCATATGCAAGTTATACAAGTTCAAATGCTAATTCGAATGCGAATACTAGGGTTAGGAACATGAAAGTTGGTGTTTTTGGGAAGAATAAAGAGGTTGGTGATATTGTTGATGATAATAAGTTGGTGTTTTTTGACGAGAATGGGAAAGACGATGATCGGAGAAATGCAGGTTCAAACTCGAATGAAAATGCGAATGCTAGGGTTAAGAGCAAGAAAGTTGGTGTTTTTGGTGTTGGGGGGAAGAAAGATGAGGTTGGTGATGGTGATGATAAGTTGATGTTTTTTGAGGAGAATGAGAAAGGGGTGGAAAGAGAAAAGGAAAAGGGGAAGAGGGGTGTGGATAGTAAAGATGTTAGTGAGAAGAAGGTAGAGGAGTTTTTTAAGGGTTTGAATGTGAAGAAGGAGGTTGAAGTTGTTGAGCCATTTTTTAGTTCGAGGAGGACGGGACTTCCTCCTGTTTGGGATAGTTCGCATGGGACTGTGCTTTTGATTAACAAACCTAAAGGTTGGACTTCATTCACAGTTTGTGGAAAGCTTCGTCGCCTTGTCAAAGTGAAAAAGGTAGGACATGCCGGAACTCTCGATCCAATGGCTACTGGTTTATTGATTGTTTGTGTTGGCAAATCAACGAAACTTGTGGATAGATATCAAGGGATGGTTAAGGGTTATAGTGGGGTTTTCCGCTTAGGGGAGGCTACTTCAACATGGGATGCTGATTCACCAGTCATTCAGCGTGAGCCATGGGAGCACATCAAAGACGAGGACATAAAGAAAAGTGCCTTGTCCTTTTGTGGAGAGATTTGGCAAGTTCCACCTATGTTCTCTGCTATTAAAGTTGGAGGTGAAAAGTTGTATGAGAAAGCAAGGAGAGGAGAAAGCATTGAACTCTCGCCTAGACGAATTTCAATTTTCCAATTTGACATAGAGCGTAGCTTGGATGACAGACAAAATTTGATTTTTAGAGTGATTTGTTCTAAAGGGACATATATTCGATCACTCTGTGCGGATTTTGGGAAGGCTCTTGGCAGTTGCGCCCACTTAACGGCTCTCCGAAGAGATTCAATTGGACAATATTCAGCAGATGATGCATGGGACTTTCAGGAGCTGGAAGAGGCTATCACCAAAACTTATCTTTAA 1719 0.4159 MVKPISLSLTHHLHFLTTTSSSRLFHPFSTLRFFSTTPYPLQYELIINRPNLPKPTRTSKPEPTPPQNSSLQSWANDKLTTEPESNRPGSSKFELDNNLDKSKRKYYNKRRKRMYGSDSDDDHRRNEEQLVEMIPEVVELRTLHKREEELYMYDAFCYPWEKDKHYKMVYQLEKKYFPNQCLDQAFLKPGQSNCSYASYTSSNANSNANTRVRNMKVGVFGKNKEVGDIVDDNKLVFFDENGKDDDRRNAGSNSNENANARVKSKKVGVFGVGGKKDEVGDGDDKLMFFEENEKGVEREKEKGKRGVDSKDVSEKKVEEFFKGLNVKKEVEVVEPFFSSRRTGLPPVWDSSHGTVLLINKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKSTKLVDRYQGMVKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKKSALSFCGEIWQVPPMFSAIKVGGEKLYEKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVICSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWDFQELEEAITKTYL* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0028 572 TIGRFAM TruB: tRNA pseudouridine(55) synthase 354 563 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mtr6g0028 572 Pfam TruB family pseudouridylate synthase (N terminal domain) 374 524 IPR002501 GO:0006396
Mtr6g0028 572 SUPERFAMILY Pseudouridine synthase 354 567 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mtr6g0028 572 MobiDBLite consensus disorder prediction 50 126 - -
Mtr6g0028 572 MobiDBLite consensus disorder prediction 63 93 - -
Mtr6g0028 572 MobiDBLite consensus disorder prediction 112 126 - -
Mtr6g0028 572 CDD PseudoU_synth_EcTruB 355 566 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mtr6g0028 572 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 327 570 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mtr6g0028 572 Hamap tRNA pseudouridine synthase B [truB]. 352 572 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mtr6g0028 572 MobiDBLite consensus disorder prediction 241 260 - -
Mtr6g0028 572 Gene3D Pseudouridine synthase 349 571 - -
Mtr6g0028 572 Pfam tRNA pseudouridylate synthase B C-terminal domain 525 568 IPR032819 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0028 Mtr-Chr6 267678 273972 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0028 355 546 NAC Transcription Factor Family AT3G57150 32.812 1.63e-19 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0028 K03177 - gmx:100793939 635.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0028 6 267678 273972 Mtr6g0028 6 267678 273972 ECH