Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3587 ATGGAGAACGAGATGGTAGAATTTGATATTGGGTTGGGAGGAGAATATGAGGAGGAGGCGCGAATTGAGATGATGGATGAAGATGAGGAGGAAGAATATGAAGAAGAAGAAGAAGAAGAAGAAGATGATGATGATGGCAGCGGTGCTGTTTATTTTCCTGAGGCTGGAGATCTGGAACCTTCTGAGGGTATGGAATTCGAGTCTGAAGAGGCTGCTAAGGCTTTCTATAATTCCTATGCTCGTCGTGTTGGTTTCAGTACTCGCGTCAGTTCTTCTCGTCGTTCTCGCCGCGACGGAGCTATCATTCAGAGACAATTTGTTTGTGCTAAAGAAGGGTTTCGCAATTTGAACGAGAAACGTACCAAAGACAGAGAGATCAAACGCCCACGAACAGTCACTAGGGTTGGATGCAAAGCCTCTTTATCTGTCAAAATGCACGATTCTTCTGCCAAGTGGATCGTATCCGGCTTCGTCAGAGAACACAATCACGAACTTGTTCCACCCGATCAGGTTCACTGCCTTCGTTCCCACAGGCAAATTTCTGGTTCTGCAAAAACCCTAATTGACACTCTACAGGCTGCTGGTATGGGTCCTCGCCGAATTATGTCTGCACTCATCAAAGAGTATGGTGGTATCAGCAAAGTTGGCTTTACTGAGGTTGATTGTAGGAATTACATGAGGAATAATCGCCATAAAAGTTTACAAGGCGACATTCAACTTGTTCTTGATTATTTGAGACAAATGCATGCCCAAAATCCTAATTTCTTCTTTGCTGTTCAAGGTGATCTTGATGACGAGGATCATCCCATCACCAATGTTTTCTGGGCTGACCCCAAGGCAAGGTTGAATTACACTTTTTTCGGAGATACTGTCACTTTTGACACTACTTACCGCTCTAACAGGTATCGATTACCCTTTGCTCCCTTTACTGGTGTAAACCATCATGGTCAACCTGTTCTCTTTGGTTGTGCTTTTCTAATTAATGAAACTGAAGCTTCCTTTGTCTGGCTTTTCAACACATGGCTTACCGCCATGTCTGGACGCCCCCCACTCTCCATAACCACTGATCATGATTCTGTCATTCAGTCTGCTATAATGCAAGTATTCCCAGACACTCGCCACCGTTTCTGCAAGTGGCATATCTTTAAGCAATGCCAGGAGAAGTTGTCTCACATTTTTCTCCAGTTCCCAAACTTTGAAGCCGAGTTTCACAAATGTGTTAACTTGACTGACTCAATTGACGAATTTGAGTCTTGCTGGTCCACACTTTTAGACAGATATGATCTCAGGGACAACGAATGGCTTCAAGCAATACATTCTGCTTGCAGGCAGTGGGTACCTGTATATTTGCGAGACACATTCTTTGCAGAGATGTCCATCACTCAGCGAAGTGATAGCATGAACTCTTACTTTGATGGCTATGTGAATGCTTCAACCAGTTTAAATCAGTTCTTTAAGCTTTATGAGAAAACGCTTGAAAGTCGCAATGAGAAAGAAGTAAGGGCAGATTATGACACAATGAATACTTTGCCAGTATTGAGGACCCCATCTCCAATGGAGAGGCAAGCATCCGAGCTTTACACAAGAAAAATTTTCACACGATTCCAAGAGGAGTTGGTTGGCACACTAACATTCATGGCATCCAAAGCCGAGGATGATGGGGAGGTCATTACATATCATGTAGCTAAATTTGGAGAGGATCATAAAGCATACAATGTTAGATTCAACGTTTTAGAGATGAAAGCGACTTGCAGTTGCCAAATGTTTGAGTTTTCAGGCCTTCTTTGCAGACATATTCTAGCAGTCTTTAGAGTTACCAATGTCCTTACTCTTCCATCTCATTATATACTCAAACGCTGGACAAAAAATGCCAAAAGCAACGTCAGTTTGCAAGAACATTCTTCTCATGCATATACTTACTATTTGGAATCTCATACAGTTAGATATAATACTCTCCGACATGAAGCCTTTAAATTTGTTGATAAAGGTGCAAGCTCCCCTGAAACTTATGATGTTGCAAAGGATGCTTTACAAGAAGCGGCAAAAAGAGTTGCGCAGGTAATGCGAAAGGAGGGGAGAACTCCCATCAGCAATGGGAAGGTTAGGAGTCACTTGCTGAATGATGAAAATCATGCTATTTACAGTAGTGGCTGTCAGGAGGAAAGCTTGGGCGAGCATATGAATGAGGATGATATGGATAAGCATATCACGAAACTTACGGATGAGCTTGAGTGTGCAAATAGGAAGTGTGAAATGTACCGGTCTAACTTGCTCTCTGTTTTGAAAGCTGTTGAGGATCACAAGTTAGAGTTGTCAGTAAAGGTGGAAAACATTAAGATAAGCATGAAAGACGGCCTCTGA 2361 0.4257 MENEMVEFDIGLGGEYEEEARIEMMDEDEEEEYEEEEEEEEDDDDGSGAVYFPEAGDLEPSEGMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRTKDREIKRPRTVTRVGCKASLSVKMHDSSAKWIVSGFVREHNHELVPPDQVHCLRSHRQISGSAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRHKSLQGDIQLVLDYLRQMHAQNPNFFFAVQGDLDDEDHPITNVFWADPKARLNYTFFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCAFLINETEASFVWLFNTWLTAMSGRPPLSITTDHDSVIQSAIMQVFPDTRHRFCKWHIFKQCQEKLSHIFLQFPNFEAEFHKCVNLTDSIDEFESCWSTLLDRYDLRDNEWLQAIHSACRQWVPVYLRDTFFAEMSITQRSDSMNSYFDGYVNASTSLNQFFKLYEKTLESRNEKEVRADYDTMNTLPVLRTPSPMERQASELYTRKIFTRFQEELVGTLTFMASKAEDDGEVITYHVAKFGEDHKAYNVRFNVLEMKATCSCQMFEFSGLLCRHILAVFRVTNVLTLPSHYILKRWTKNAKSNVSLQEHSSHAYTYYLESHTVRYNTLRHEAFKFVDKGASSPETYDVAKDALQEAAKRVAQVMRKEGRTPISNGKVRSHLLNDENHAIYSSGCQEESLGEHMNEDDMDKHITKLTDELECANRKCEMYRSNLLSVLKAVEDHKLELSVKVENIKISMKDGL* 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3587 786 ProSiteProfiles Zinc finger SWIM-type profile. 571 607 IPR007527 GO:0008270
Mtr5g3587 786 Coils Coil 19 39 - -
Mtr5g3587 786 MobiDBLite consensus disorder prediction 1 57 - -
Mtr5g3587 786 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 43 759 IPR031052 GO:0006355
Mtr5g3587 786 SMART 26again6 582 609 IPR006564 GO:0008270
Mtr5g3587 786 MobiDBLite consensus disorder prediction 20 48 - -
Mtr5g3587 786 Pfam FAR1 DNA-binding domain 75 167 IPR004330 -
Mtr5g3587 786 Pfam MULE transposase domain 291 383 IPR018289 -
Mtr5g3587 786 Coils Coil 736 756 - -
Mtr5g3587 786 Pfam SWIM zinc finger 559 605 IPR007527 GO:0008270
Mtr5g3587 786 Coils Coil 670 690 - -
Mtr5g3587 786 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 43 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3587 Mtr-Chr5 44734437 44740101 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr5g3587 MULE 2.1e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3587 - - gmx:100793442 1316.6