Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3578 ATGGGGATTTGCTGGAGTTCGACACCTAACAATCCAATTCCAACTGGAACCGTTACACCTGCAGGGATATCTTATTCCCAAGCGGCCTCCAGTGGCAGCTACGGTACTAATAGTACTATCACTTCTTCTACTGCAACAACTACTACTTTTACTACTTCTTCTGGAAGCAGTAGTAACATGTCCTCCTCCTCCTCCTCCATAAACAGAAGCAACTTCTCCTCCGTCTCTGATTATTCAATTGGTGGTCAGATCTTACCTACTTCTAATCTTAGGGTCTTCACTTTTGCTGAATTGAAGACTGCTACCAAGAATTTCAGACTTGATAATCTCCTTGGAGAAGGTGGTTTTGGTAAAGTTTACAAGGGATGGCTTGAATCTTCCAGGAATTCCAGTGGAACTACCGTTGCCGTCAAAAAGTTAAACACTGAAGGCTACCAAGGCTTCGAGGAATGGCAGTCAGAAATACATTTTCTGGGACGCCTTTATCATCCTAACCTTGTTAAGCTGTTGGGTTACTGTTATGAGGAAACAGAGCTTCTTCTTGTCTATGAATACATGCAGAGGGGCAGTTTGGAGAATCACCTCTTTGGAAGAGGTGCTGCTGTTCAACCACTTCCTTGGGACCTCAGACTTAAGATAGCAATTGGCGCTGCTTGTGGCCTTTCCTTCTTACATACTTCCGATAGAGAAATTATTTACAGAGATTTTAAGGCATCCAATATATTGCTCGATGGGTCCTATAATGCCAAGATATCAGATTTTGGACTTGCTAAGCTGGGTCCTTCTGCTAGTCAATCCCATTTGTCAACAACAGTGATGGGAACACCTGGTTATGCAGCTCCTGAATATATGCAAACAGGTCATCTATATGTAAAGAGTGATGTCTATGGGTTTGGAGTTGTTTTGGTCGAGATACTCACAGGTCTACGAGCAGTTGATCTCAACCGTCCAAGCGGCCGTCACATTCTAACAGACTGGATCAAACCAGAATTACAAGATAGAAAAAAATTGAAGAAGGTTATGGATCCACAATTGGGAGATAAGTATCCAATCAAAGCTGCACTTCCTATAGCTAAGCTTGCTATAAGTTGCCTTGCACCTGAGCCCAAACTGCGTCCATCCATGAGGGATGTTTTGGAAAGGTTGCAGGGAATTCAAGCTGCCACTAACAGAACCGTGGAAGTTAGGGGTGCAAATTAA 1200 0.4325 MGICWSSTPNNPIPTGTVTPAGISYSQAASSGSYGTNSTITSSTATTTTFTTSSGSSSNMSSSSSSINRSNFSSVSDYSIGGQILPTSNLRVFTFAELKTATKNFRLDNLLGEGGFGKVYKGWLESSRNSSGTTVAVKKLNTEGYQGFEEWQSEIHFLGRLYHPNLVKLLGYCYEETELLLVYEYMQRGSLENHLFGRGAAVQPLPWDLRLKIAIGAACGLSFLHTSDREIIYRDFKASNILLDGSYNAKISDFGLAKLGPSASQSHLSTTVMGTPGYAAPEYMQTGHLYVKSDVYGFGVVLVEILTGLRAVDLNRPSGRHILTDWIKPELQDRKKLKKVMDPQLGDKYPIKAALPIAKLAISCLAPEPKLRPSMRDVLERLQGIQAATNRTVEVRGAN* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3578 399 ProSitePatterns Protein kinases ATP-binding region signature. 111 139 IPR017441 GO:0005524
Mtr5g3578 399 CDD STKc_IRAK 111 385 - -
Mtr5g3578 399 Gene3D Phosphorylase Kinase; domain 1 81 185 - -
Mtr5g3578 399 ProSiteProfiles Protein kinase domain profile. 105 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g3578 399 PANTHER SERINE/THREONINE-PROTEIN KINASE PIX13-RELATED 37 389 - -
Mtr5g3578 399 Pfam Protein tyrosine and serine/threonine kinase 107 382 IPR001245 GO:0004672|GO:0006468
Mtr5g3578 399 PANTHER OS01G0588500 PROTEIN-RELATED 37 389 - -
Mtr5g3578 399 Gene3D Transferase(Phosphotransferase) domain 1 186 397 - -
Mtr5g3578 399 SUPERFAMILY Protein kinase-like (PK-like) 74 382 IPR011009 -
Mtr5g3578 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Mtr5g3578 399 MobiDBLite consensus disorder prediction 47 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3578 Mtr-Chr5 44647467 44649597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3578 51 395 Glycoside Hydrolase AT3G07070 44.798 2.34e-98 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Mtr5g3578 PK_Tyr_Ser-Thr 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3578 - - mtr:MTR_5g099130 699.123