Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3576 ATGGAATATGGTGGTGGGTTAGTGGCTGACGGTGGTGTGTTTGGACCGATGGTGGGAGGAGGAGGAGGAGATCAAGCAGATATAATTGAGGAGCTGTTGGGAGAAGGTTGCTGGATTGAAGCAAGTGAGAATAGTTTGATGGCCATGCAGCAAACTACGCCACAATCACAATACATGTCCAACAATAATAATATTCCTATGGGAATGGGAGAGGGAGATCACTTCAATCATCATCATCATCATCATCCTCATCCTCATCATCAAATGGAATGCACTGCTCCAGCAGCAAATCATGATGATCAGCAGGAAAGTGGTTTTGTTGTTGGGAAGAGATGGTGGATTGGGCCTAGGGCAAATCCAGGTCCAACAACATCTGTCAAAGAAAGATTAGTGGTTGCTGTTGGTTACTTAAAAGAGTACACAAAGAACTCATCCAACAACGTCCTTATTCAGATATGGGTACCTATGAGGAGGAGATCAGCCCTAATTCACACTCAAAACCACTACCTTCAGCAGGAGTCATCATCTGCACCTGTTTCTGTGAATCCAAACATGAACGTTCATGTTCGTTTCTTTAGAAGCCATGACTATCCGCGTCATCAGCAGCAACAGCAATATGGATCTCTTCTAGCACTTCCAGTTTTTGAGAGAGGAAGTGGGACATGCCTTGGTGTTATTGAGTTTGTTATCTCCAATCAAACCCTCATCAATTACCGTCCACAACTTGATCATCTCTCTAATGCTCTTGAGGCTGTTGATTTTAGAAGTAGTCACAACATGAATATCCCACAAGCAGTAAAGGTATTTGAAGAGCTATATGAAGCAGCGGTGAACGAGATAATGGAAGTGTTGGCGTCAGTGTGCAAGACGCACAATTTACCATTAGCACTAACATGGGCTCCTTGCCTACAACAACAACAAGGAGGAGGAAAGGGAAGTAGTGGTGCATCAGGTTGTGGTGTTTCAACTATGAGTTGCTGCATATCAACGGTTGATTCAGCTTGTTATGTTGGTGACATGGATGTATTGGGATTCCAAGAAGCGTGCAGTGAGTATCACCTTTTTAATGGACAAGGAATAGTAGGAACAGCCTTCACAACAACCAAACCTTGTTTTGCTATTGATATTACTGCCTTCAGCAAATCTGAATATCCACTTGCTCACCATGCCAACATGTTTGGCTTACACGCTGCTGTTGCCATTCCATTGAGGAGTGTCTACACTGGTTCTGCTGCTGATTTTGTTTTGGAATTTTTCCTTCCTAAAGATTGTCGTGACACCGAACAGCAGAAACAAATGCTAAACTCATTGTCCCTTGTTGTTCAACAAGCTTGTAGGAGCTTGCATTTGCATGTCGTCATGGACGATAATAATAATAATAATATGAATGATAATAATTCTTCAGCTGACCATGATCATGATCAATTCACCTTCCCAACAACAAATAGTTACATGCCTTCTTCTGCTTCTGAACCACTATCACAAGTTGATGCAGTTTCAGGTTGTTCAACCAAAGACACTTCATCATCATGTTCTTGGATTGCACATATGATGGAGGCTCAGAACAAGGGGAAAGGCGTCTCCGTGTCATTGGAATACCTTCAAGAGCCTAAAGAGGAATTCAAAGTCACAACCTGCAACTGGGACAGGGAGAGGGAGGACAATGTCTTTTCAGAATTCGGCCAAGTACTGCAGCAGCAGCAGCATGATCAGAGCAGTAATTCAAGGGCAAGTGTTGTAAGTGTAGAAGCTGGTGAAGAATCTCCTGGTGCCTGTGGTCGCCGGTCGTCTTCTTCTTCGAGTGGGAGAAAGTCCGGGGACAAGCGAAGAACCAAGGCGGAGAAGACTATAAGCTTGCCGGTTCTGAGACAATACTTTGCCGGAAGCCTAAAGGACGCCGCAAAGAGCATCGGTGTGTGTCCTACAACTCTGAAAAGGATATGCAGACAGCATGGGATTACAAGATGGCCTTCAAGAAAAATAAAGAAGGTGGGCCACTCTTTAAAGAAGCTACAACTTGTGATTGATTCTGTTCAAGGTGCAGAGGGTGCCATACAGATTGGCTCTTTCTATGCCAGCTTCCCAGAGTTGAGCAATGCAACTGCTAATGGTGGTGATGGTAATGATAACAGCAACAATAGCTTCTATAATAATAACCATGGAGATGGAATAGTTACTAGTTTGAAATCCCCACCCTCTGCTTGCAGTCAGACCCATGCAGGAAACAAATTACCTATGACTACTACTACTGCCATTAACCATCATCATGTTGTGATGACAGAAAACCCTACAGGAGCTCCTTTAGGAGTTGATCATGCCTTCATGCATGCATCTAATATTAATATCCAGGACTACCATCAGCTGCAGGAGGATCTTGATACTAAGCAATTACTGCTACATTTCAACAACAATAATCAAATCCTACCTCCAAGACCAACTGTGGCCTGGAACAACAACAATTCTTCATCATCAACACTCCTAGAAAGGGGTGCTTTCAGAGTGAAGGCAACTTTCGCGGATGAAAAAATCAGGTTTAGCTTGCAAGCAATGTGGGGATTTAGAGATTTGCAGCTTGAGATTGCAAGGCGATTTAACCTAACAGATATGAACAACTTGGTTCTAAAATATTTGGATGATGAAGGAGAATGGGTTGTGTTATCATGTGATGCTGATCTTGAAGAATGTAAAGACTTGCACACATCATCTCACACACGTACCATTAGACTCTCTCTTTTTCAAGCTTCCCCTCTCAATCTTCCAAACACTTTCCGCAACAGCAGCAGCAGCAGTCCATCCTCCTAG 2802 0.4333 MEYGGGLVADGGVFGPMVGGGGGDQADIIEELLGEGCWIEASENSLMAMQQTTPQSQYMSNNNNIPMGMGEGDHFNHHHHHHPHPHHQMECTAPAANHDDQQESGFVVGKRWWIGPRANPGPTTSVKERLVVAVGYLKEYTKNSSNNVLIQIWVPMRRRSALIHTQNHYLQQESSSAPVSVNPNMNVHVRFFRSHDYPRHQQQQQYGSLLALPVFERGSGTCLGVIEFVISNQTLINYRPQLDHLSNALEAVDFRSSHNMNIPQAVKVFEELYEAAVNEIMEVLASVCKTHNLPLALTWAPCLQQQQGGGKGSSGASGCGVSTMSCCISTVDSACYVGDMDVLGFQEACSEYHLFNGQGIVGTAFTTTKPCFAIDITAFSKSEYPLAHHANMFGLHAAVAIPLRSVYTGSAADFVLEFFLPKDCRDTEQQKQMLNSLSLVVQQACRSLHLHVVMDDNNNNNMNDNNSSADHDHDQFTFPTTNSYMPSSASEPLSQVDAVSGCSTKDTSSSCSWIAHMMEAQNKGKGVSVSLEYLQEPKEEFKVTTCNWDREREDNVFSEFGQVLQQQQHDQSSNSRASVVSVEAGEESPGACGRRSSSSSSGRKSGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYASFPELSNATANGGDGNDNSNNSFYNNNHGDGIVTSLKSPPSACSQTHAGNKLPMTTTTAINHHHVVMTENPTGAPLGVDHAFMHASNINIQDYHQLQEDLDTKQLLLHFNNNNQILPPRPTVAWNNNNSSSSTLLERGAFRVKATFADEKIRFSLQAMWGFRDLQLEIARRFNLTDMNNLVLKYLDDEGEWVVLSCDADLEECKDLHTSSHTRTIRLSLFQASPLNLPNTFRNSSSSSPSS* 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3576 933 CDD PB1_NLP 832 913 IPR034891 -
Mtr5g3576 933 MobiDBLite consensus disorder prediction 71 91 - -
Mtr5g3576 933 SMART PB1_new 831 914 IPR000270 GO:0005515
Mtr5g3576 933 ProSiteProfiles PB1 domain profile. 831 914 IPR000270 GO:0005515
Mtr5g3576 933 MobiDBLite consensus disorder prediction 563 581 - -
Mtr5g3576 933 PANTHER PROTEIN NLP8 30 922 IPR045012 GO:0003700
Mtr5g3576 933 Pfam RWP-RK domain 617 664 IPR003035 -
Mtr5g3576 933 PANTHER PROTEIN NLP2 30 922 - -
Mtr5g3576 933 SUPERFAMILY CAD & PB1 domains 820 916 - -
Mtr5g3576 933 Pfam PB1 domain 832 913 IPR000270 GO:0005515
Mtr5g3576 933 ProSiteProfiles RWP-RK domain profile. 603 684 IPR003035 -
Mtr5g3576 933 MobiDBLite consensus disorder prediction 563 614 - -
Mtr5g3576 933 Gene3D - 830 916 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3576 Mtr-Chr5 44599913 44603635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3576 27 923 NLP Transcription Factor Family AT4G35270 40.942 0.0 619
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Mtr5g3576 PB1 2.7e-14 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3576 - - mtr:MTR_5g099060 1740.7