Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3575 ATGAAAGGTGGAGATAAAAATTGGTCCGATGATCATAGTAGTGGTGATCAATACAGGATGAAAGATGATACTGTTACTGGTAAGAAGAAGAGTAAGGAATTGGGTGGGGAATCATCATCATCATCATCGAACAACATTGCTCGTACTTGCACTGAATGTGGTAAGATATTCTGGTCATGGAAGGCTCTTTTTGGTCATATGCGTTGTCATCCTGAGCGTGAATGGAGAGGCATTAACCCTCCACCTAATTTCAGAAGACAACAACTTGTTGTGACTCCAGAAGAACAGGAAGGTGCTGCTTCTTTGCTCTTACTTTCTAATTCAAATCCAAAGAACAAGAAAGCAAAAGCAAAAGCAACAACAACGGTGGTCGATGAGGATGATCAGTTTGTGTGTTCGTGTTGTAACAAAGTATTTGGATCCCATCAGGCACTTGGAGGACACAGGGCTAGTCACAAGAATGTCAAGGGCTGTTTCGCCAATACAACAACAACAATAACCGCTTCTTCTAATTCTACTACTGGAAGGACGTTCATGACGCCTCACGATGACACAATGACTCGTGGTGGAAACGTGGAAGTGGAAGGGGAAGCGGTTAATAATAATGAGATGATTAACTGCATCATCGGACACAAGTGTAGCATATGTTTGAGGGTATTTAGCACTGGACAAGCACTCGGTGGTCATAAGAGGTGTCATTGGGAAAAAGTGGAACCCAAAACACCAACACCAACACCAACACTACCATTTGATTTGAATTTCCCTTTTCCACCTCTCCCTCCTCCAGATCATAATCATTCTTCTTCTCCCCTCACTCTTGATTTGAGGTTGGGACTTTAA 840 0.4262 MKGGDKNWSDDHSSGDQYRMKDDTVTGKKKSKELGGESSSSSSNNIARTCTECGKIFWSWKALFGHMRCHPEREWRGINPPPNFRRQQLVVTPEEQEGAASLLLLSNSNPKNKKAKAKATTTVVDEDDQFVCSCCNKVFGSHQALGGHRASHKNVKGCFANTTTTITASSNSTTGRTFMTPHDDTMTRGGNVEVEGEAVNNNEMINCIIGHKCSICLRVFSTGQALGGHKRCHWEKVEPKTPTPTPTLPFDLNFPFPPLPPPDHNHSSSPLTLDLRLGL* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3575 279 MobiDBLite consensus disorder prediction 1 35 - -
Mtr5g3575 279 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 28 279 - -
Mtr5g3575 279 MobiDBLite consensus disorder prediction 256 279 - -
Mtr5g3575 279 SMART c2h2final6 48 70 IPR013087 -
Mtr5g3575 279 SMART c2h2final6 211 233 IPR013087 -
Mtr5g3575 279 SMART c2h2final6 130 152 IPR013087 -
Mtr5g3575 279 ProSitePatterns Zinc finger C2H2 type domain signature. 213 233 IPR013087 -
Mtr5g3575 279 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 75 IPR013087 -
Mtr5g3575 279 ProSiteProfiles Zinc finger C2H2 type domain profile. 211 233 IPR013087 -
Mtr5g3575 279 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
Mtr5g3575 279 Gene3D Classic Zinc Finger 48 152 - -
Mtr5g3575 279 Pfam C2H2-type zinc finger 211 235 - -
Mtr5g3575 279 Pfam C2H2-type zinc finger 49 72 - -
Mtr5g3575 279 Pfam C2H2-type zinc finger 130 153 - -
Mtr5g3575 279 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 28 279 - -
Mtr5g3575 279 MobiDBLite consensus disorder prediction 1 45 - -
Mtr5g3575 279 SUPERFAMILY beta-beta-alpha zinc fingers 49 152 IPR036236 -
Mtr5g3575 279 ProSiteProfiles Zinc finger C2H2 type domain profile. 130 157 IPR013087 -
Mtr5g3575 279 ProSitePatterns Zinc finger C2H2 type domain signature. 132 152 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3575 Mtr-Chr5 44575666 44576505 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3575 46 279 C2H2 Transcription Factor Family AT4G35280 45.783 3.18e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr5g3575 zf-C2H2_6 1.2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3575 - - mtr:MTR_5g099040 453.366