Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3564 ATGGAGATGCAACAGCTTCTGAGCATGGGTTTTCCTGATGAGTTAGCCGCTCAAGCCTTAGCTGCCACTGGTGGTAAATCCACTGTCAAAGCCACTGAATGGATTCTTACTCATAAACCCCCCAATTCCACCATTCACACCCCTTCCTCTTCTCCTTCTTCTGCTTTTCAACCCAAACTCGATCGTTTCTTCCAAACCCCACAACAACCCATTCAAGCAGAACAACAACAACAACAAACAGAAGAACCAAACAAACGAACGAAGCTATCACCAACACAACAAAACAAACCTTCATTCTTCTTCAAACCAACTTCCATGAAACAACAACCTCAAACTCATGAACCATTGTACGAACGACTCCGACCCAGAACACTCGACGAGGTTGTCGGACAAGATCATCTCTTATCAACAAACTCCATTCTCCGTTCATCAATTCAACGCAAACGTCTACCTTCAATCCTTTTGTGGGGTCCACCTGGTACAGGTAAAACCACCATTGCAAAAGCCATTGTTAATTCATCATCAACAACAAAAGATTCACCTTTGTATCGTTTTGTATCTTTATCCGCGGTTACGAGCGGTGTTAAAGATGTTAGAGAAGCTGTTGATGAAGCTAGAAAAGTTAGAGTTAAAACAAATCAAACTACTGTTTTGTTTGTTGATGAAGTTCATAGGTTTAATAAATCTCAACAAGATTCATTTTTACCTGTTATTGAAGATGGTAGTATTGTTTTTGTTGGTGCTACTACTGAAAACCCCTCTTTTCATTTGATTACACCATTGTTGTCGCGTTGCCGTGTTCTTACTCTTAACCCTCTTCAGCCACATCACCTCATTTTGCTTCTCAAACGTGCTGTTAATGACACGGAAAAAGGGTTGGTGAAAAGTCTTGGTTTTGGTTCTTGTAAAGTTGATGTTAGTGTTGGTGAGGATGTGGTTGATTTTGTAGCTAATAATTGCGACGGTGATGCTCGCGTTGCTTTGAATGTGTTGGAGATTGCTGGTGTTAATGCGGCTGCACGAGTGGAACATGATAGTGAAGAATGTCAGGATGTTGCTGTTAGTGTTAGTGTTGAGGATGCAAAGGAGGCGCTTCAATGCAAGCATCTTGCTTATGATAAAGCTGGGGAAGAACACTATAATTTGATTAGTGCATTGCATAAGTCTATGAGGGGTAGTGATGCTGATGCAGCGATTTATTGGTTGGCAAGAATGTTAAAGGGAGGTGAAGAGCCGCTTTATATTGCACGTAGGCTTGTACGGTTTGCAAGTGAGGATGTTGGTTTGGCTGATCCTTTAGCTCTTAATCAAGCTGTTTCGTGTTATCAAGCTTGTCATTTTATAGGAATGCCTGAGTGTAATGTGATTCTTGCACAGTGTGTTGCTTACTTGGCTTTGGCTCCGAAATCTATAGCAGTTTATAGAGCAATGGGAGCTGCTGAGAAGGCCGTGAGGGAATCCGTTGGACAGAATGAGGGGGTGCCTCTTCATCTCAGGAACGCACCAACCAAGTTAATGAAGGAAGTTGGGTATGGGAAGGGATACATATATACTCCTGACAACCCTTCCGCAACACAGAGCTTCTTGCCACCCTCCCTTCAAGGGTTCAAATTCCTTCATTGGCCTGACAGGGATCCCTCCGAGTTTGATGGATGA 1656 0.4275 MEMQQLLSMGFPDELAAQALAATGGKSTVKATEWILTHKPPNSTIHTPSSSPSSAFQPKLDRFFQTPQQPIQAEQQQQQTEEPNKRTKLSPTQQNKPSFFFKPTSMKQQPQTHEPLYERLRPRTLDEVVGQDHLLSTNSILRSSIQRKRLPSILLWGPPGTGKTTIAKAIVNSSSTTKDSPLYRFVSLSAVTSGVKDVREAVDEARKVRVKTNQTTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLQPHHLILLLKRAVNDTEKGLVKSLGFGSCKVDVSVGEDVVDFVANNCDGDARVALNVLEIAGVNAAARVEHDSEECQDVAVSVSVEDAKEALQCKHLAYDKAGEEHYNLISALHKSMRGSDADAAIYWLARMLKGGEEPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFIGMPECNVILAQCVAYLALAPKSIAVYRAMGAAEKAVRESVGQNEGVPLHLRNAPTKLMKEVGYGKGYIYTPDNPSATQSFLPPSLQGFKFLHWPDRDPSEFDG* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3564 551 PRINTS CbxX/CfqX superfamily signature 152 167 IPR000641 GO:0005524
Mtr5g3564 551 PRINTS CbxX/CfqX superfamily signature 205 224 IPR000641 GO:0005524
Mtr5g3564 551 PRINTS CbxX/CfqX superfamily signature 323 335 IPR000641 GO:0005524
Mtr5g3564 551 Gene3D - 470 548 - -
Mtr5g3564 551 SUPERFAMILY post-AAA+ oligomerization domain-like 376 545 IPR008921 GO:0003677|GO:0006260
Mtr5g3564 551 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 349 IPR027417 -
Mtr5g3564 551 Gene3D - 273 352 - -
Mtr5g3564 551 Gene3D - 366 469 - -
Mtr5g3564 551 SMART AAA_5 149 273 IPR003593 -
Mtr5g3564 551 Gene3D - 2 55 - -
Mtr5g3564 551 Gene3D - 103 271 IPR027417 -
Mtr5g3564 551 Pfam ATPase family associated with various cellular activities (AAA) 153 267 IPR003959 GO:0005524|GO:0016887
Mtr5g3564 551 SUPERFAMILY UBA-like 3 41 IPR009060 GO:0005515
Mtr5g3564 551 MobiDBLite consensus disorder prediction 68 110 - -
Mtr5g3564 551 CDD AAA 129 266 - -
Mtr5g3564 551 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 15 546 - -
Mtr5g3564 551 Pfam AAA C-terminal domain 305 391 IPR032423 -
Mtr5g3564 551 Pfam UBA/TS-N domain 4 35 IPR015940 -
Mtr5g3564 551 Pfam MgsA AAA+ ATPase C terminal 392 541 IPR021886 -
Mtr5g3564 551 CDD HLD_clamp_RarA 273 366 - -
Mtr5g3564 551 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 38 IPR015940 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3564 91 392 Core DNA Replication Machinery Family AT1G77470 25.080 2.08e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3564 K07478 - gmx:100799257 818.15