Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3560 ATGGCTACACAAGCTCTAGTGTCGTCATCATCTCTTACTTTTGCAGCTGAAGCTGTGAGACAGAGTTTTGGAGCAAGATCACTCCCATCTTCAATAGGGTCTTCTAGAAAAGGTTCCTTTGTTGTCAAGGCAGCTTCTTCTCCTCCTGTTAAGCAAAATGGAGCAAATAGACAATTGTGGTTTGCATCAAAGCAAAGTCTTTCTTACTTGGATGGCAGCCTTCCGGGTGACTTTGGATTTGACCCTCTAGGACTTTCAGATCCCGAAGGAACCGGTGGATTCATTGAACCAAGATGGTTAGCATACGGTGAGATAATCAACGGCCGATTTGCAATGTTGGGAGCAGCCGGAGCTATAGCACCTGAAATTCTTGGCAAAGCAGGTTTAATTCCCGCGGAAACAGCACTCCCTTGGTTCCAAACCGGCGTGATTCCACCAGCGGGAACATACAACTACTGGGCAGACAATTACACACTCTTTGTGATGGAAATGGCATTCATGGGATTTGCAGAACACAGAAGATTCCAAGATTGGTACAATCCTGGCTCCATGGGAAAACAATACTTCTTAGGACTTGAGAAAGGGCTTGGAGGTTCCGGCGAACCAGCATACCCTGGTGGACCTATATTTAACCCTCTTGGTTTTGGTAAAGATGAGAAATCATTGAAGGAATTAAAGCTGAAGGAAGTTAAGAATGGAAGGTTAGCAATGTTGGCAATATTGGGTTACTTTATTCAAGCTCTTGTTACAGGAGTTGGACCATACCAAAACCTCTTAGATCATTTGGCTGACCCTGTCAACAACAACATCTTGACCAGTCTCAAGTTCCACTAA 834 0.4448 MATQALVSSSSLTFAAEAVRQSFGARSLPSSIGSSRKGSFVVKAASSPPVKQNGANRQLWFASKQSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRFQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNILTSLKFH* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3560 277 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 276 IPR001344 GO:0009765|GO:0016020
Mtr5g3560 277 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 276 - -
Mtr5g3560 277 SUPERFAMILY Chlorophyll a-b binding protein 56 273 - -
Mtr5g3560 277 Pfam Chlorophyll A-B binding protein 68 247 IPR022796 -
Mtr5g3560 277 Gene3D Chlorophyll a/b binding protein domain 58 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3560 Mtr-Chr5 44446596 44453707 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3560 1 277 Chloroplast and Mitochondria Gene Families AT1G61520 87.004 5.96e-170 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3560 K08909 - gmx:100784090 484.182