Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3558 ATGGCAACCATTAATCCACAAAATGTTAGCTCAAACTTGATCATTGACTCAGACCCTTTGAACTGGAATTCAGCTGCTAATTCACTCAAGGGTAGCCACCTTGATGAAGTAAAACGTATGTTAGCAGAGTACAAGAAGCCAGTCATATGTCTTGGTGGGGTGGGGACACTAACTATATCTCAGGTGGCTGCTGTTTCTAACAGTAGCTCACATGTTAAGGTTGAACTCTCAGAGTCTGCAAGGGCCGGTGTTGAAGCTAGCTGCGACTGGATCTCCGAAAACATTGTCAAAGGTACTCCAATTTATGGTGTTACCACTGGCTTTGGTGCTGCCTCACATAGAAGAACTGAACAAGGCTTTGCTCTTCAGAAAGAGATGGTTAGGTTTCTAAACTGCGCAATATTTGGGCGTGAAAGTGAGTTGTCTCATACACTGCCTTCGTCGGCAACAAGAGCAGCTATGCTTGTGAGGGTTAATACCCTTCTACAAGGCTATTCAGGCATTAGATTTGAAATCTTAGAAGCTATCACCAAGCTCCTCAACCATAATGTCACACCAATCTTGCCATTGCGCGGCACAGTTACCGCTTCCGGTGATCTAATTCCTCTGTCCTACATCGCTGCATTGCTAACCGGTAGGCGAAATTCCAGAGCTGTTGGACCCTCGAAAGAGTCCCTTAATGCCAAGGAAGCTTTCCATTTAGCAGGTCTGAGTTCTGGGTTCTTCGAGTTGAAGCCGAAGGAAGGTCTTGCTCTTGTAAACGGTACAGCTGTTGGATCTGGTGTGGCTTCTATGGTACTTTTTGAGGCAAACATATTAGCTTTGTTTTCAGTAGTTCTATCAGCAGTTTTCACTGAAGTCATGCAAGGAAAGCCGGAATTTACACATCATCTTATACACAAGCTGAAGTTCCATCCAGGTCAAATCGAGGCAGCTGCTATTATGGAACACATTTTAGATGGAAGCTCATATATCAAAAACGCGAAACAGCAGCAGCCAGATCCATTGCAGAAGCCTAGAAAAGATCGTTATGCTCTTGTAACTTCTCCTCAGTGGCTCGGTCCACAGATTGAAGTTATCCGGTTTTCGACCAAATCGATTGAAAGGGAGATAAATTCAGTGAACGACAATCCTCTGATTGATGTGGCAACGGATAAGGCTCTAAATGGTGGTAATTTCCAAGGCACCCCAATTGGAGTTTCAATGGATAATGTACGTTTAGCTGTTACTTCAATTGGAAAACTCGTCTTTGCGCAATTTACTGAGTTAGTCAATGACTTGTATAACAATGGGCTGCCGTCAAATCTTTCTGCTGGTAGAAACCCAAGTCTGGATTATGGTTTTAAGGCCTCTGAAGTTGCCATGGCTGCTTATTGTTCTGAACTTCAATATTTAGCAAATCCTGTGACAAGTCATGTGCAAAGTGCTGAGCAGCACAACCAAGATGTGAACTCTTTGGGGTTGATTTCTGCTATGAAAACAGTGGAAGCCATTGAGATATTGAAGCTCATGTCTTCCACATATTTGGTTGCACTCTGCCAAGCTATTGACTTGAGGCATTTGGAGGAAATTTTCAAGAACTCTGTCAAGAAAACTGTAAGCAGAGTTTTTAAGAAGACATTAATCATAGATGACAGAGAAGAAATCGATCCATTTAGACATTGTGAGGAAAATTTGCTCAAAGTGGTTGATAGAGAATATGTATTCTCCTACATAGATGATCCCTTTAATGTTACGTACCCGTTGATGCCAAAACTAAAGCAAGTACTTTATGAGCATGCGCACATCAGTGCCATAAATAATAAGGATGCGAAATCTTCAACATTTGAGAAAATTGGAGCTTTTGAGGATGAATTGAAGTCTCTTTTGCCAAAGGAAGTTGAAAGTGCAAGGGTTGCATTTGAGAAGGGAAATTCTGAAATTCCAAACAGAATTAAGGAATGTAGGTCATACCCACTATACAAGTTTGTGAGGGAAGAACTAAAGATAGGGTTGCTGACAGGAGAAAAGGATGTCACACCAGATGAGGAATTTGAAAAAGTATTTACAGCAATGTGTCAAGCAAAGATTGTTGATCCAATTCTGGAATGCCTTGGTGATTGGAAAGGAGTTCCCATCCCAATATGA 2127 0.4189 MATINPQNVSSNLIIDSDPLNWNSAANSLKGSHLDEVKRMLAEYKKPVICLGGVGTLTISQVAAVSNSSSHVKVELSESARAGVEASCDWISENIVKGTPIYGVTTGFGAASHRRTEQGFALQKEMVRFLNCAIFGRESELSHTLPSSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNVTPILPLRGTVTASGDLIPLSYIAALLTGRRNSRAVGPSKESLNAKEAFHLAGLSSGFFELKPKEGLALVNGTAVGSGVASMVLFEANILALFSVVLSAVFTEVMQGKPEFTHHLIHKLKFHPGQIEAAAIMEHILDGSSYIKNAKQQQPDPLQKPRKDRYALVTSPQWLGPQIEVIRFSTKSIEREINSVNDNPLIDVATDKALNGGNFQGTPIGVSMDNVRLAVTSIGKLVFAQFTELVNDLYNNGLPSNLSAGRNPSLDYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISAMKTVEAIEILKLMSSTYLVALCQAIDLRHLEEIFKNSVKKTVSRVFKKTLIIDDREEIDPFRHCEENLLKVVDREYVFSYIDDPFNVTYPLMPKLKQVLYEHAHISAINNKDAKSSTFEKIGAFEDELKSLLPKEVESARVAFEKGNSEIPNRIKECRSYPLYKFVREELKIGLLTGEKDVTPDEEFEKVFTAMCQAKIVDPILECLGDWKGVPIPI* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3558 708 Gene3D Fumarase/aspartase (Central domain) 257 703 - -
Mtr5g3558 708 Pfam Aromatic amino acid lyase 57 522 IPR001106 -
Mtr5g3558 708 CDD PAL-HAL 55 519 IPR001106 -
Mtr5g3558 708 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 18 698 IPR005922 GO:0005737|GO:0006559|GO:0016841
Mtr5g3558 708 PANTHER HISTIDINE AMMONIA-LYASE 1 708 IPR001106 -
Mtr5g3558 708 Gene3D - 522 643 IPR023144 -
Mtr5g3558 708 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 192 208 IPR022313 GO:0016841
Mtr5g3558 708 SUPERFAMILY L-aspartase-like 18 708 IPR008948 GO:0003824
Mtr5g3558 708 PANTHER PHENYLALANINE AMMONIA-LYASE 1 708 - -
Mtr5g3558 708 Gene3D - 9 256 IPR024083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3558 Mtr-Chr5 44407255 44410204 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3558 10 708 Monolignol Biosynthesis Gene Families AT2G37040 71.469 0.0 1060
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3558 K10775 - gmx:100787872 1200.65