Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3556 ATGGCGAACATCATCACTCACCACCTTCCTTGTGACGCTGACGGTGTATGCATGGTTTGCAAACAAAAACCATCAGAAACCGAAACACTTCATTGCAAAACCTGCACAACACCATGGCATGCTCCTTGTCTCCCTGTTGTTCCAACAACAAGTGAAATGCTCGATTGGTTGTGTCCTGATTGTGCTCAACCAAGTGATGTTGTTGCTGCTTCTGCTGCTCCGTCTGTTGCGGGGGATCTTGTCTCTGCTATTCGCGCTATCGAGAATGATCCTTCGTTGACGGAGGAAGAGAAGAGAAAGAAACGCCAAGAGTTACATGGTGGATCTTTGAAAGAGAAGGATGAGGTTCATGTTAGGAGAAGTGGTGTTCTTGATATCTTTGATGGGAGTCTTAACTGTTCGTTTTGTGTGAAGTTGCCTGAGAGACCTGTTACTACTCCATGTGGGCACAATTTCTGCTTGAAGTGTTTTGAGAAATGGGTTGGGCTAGGGAAACGAACTTGCTCAAACTGCAGGACTGCAATTCCACCGAAGATGGCGAGTAATCCAAGAATCAACGCACAGTTGGCGATTGCGATCCGTATGGCCAAGCTAGCTAGAGCAGAGAGTGTCGGTGGAAGCACTGCTCCAAAAAATTATCAAGTTGTTCTCAACGATGAGCGTCCCGACACCTGTTACACCACTGAGAGAGCAAGGAAAACAGGAAAGGCTAATGCTTGCAGTGGAAAAATCTTTGTGACTATTCCAAAGGATCACTTTGGACCAATCCTTGCTGAGTATGATCCTAATAGGAACCGTGGGGTTCTTGTTGGTGATACTTGGGAGGATAGGATGGAATGTAGGCAATGGGGAGCTCATTTTCCCCATGTTGCTGGCATTGCTGGTCAGAGTGCCCACGGGGCTCAATCTGTCGCTCTCTCGGGTGGTTATATAGATGATGAAGATCACGGGGAGTGGTTCCTTTACACTGGAAGCGGTGGAAGGGATCTCAGTGGGAATAAACGCACGAACAAAAACCAGTCATTTGACCAGAAGTTTGAAAATATGAATGAGGCTTTGCGAACCAGTTGCCGAAAAGGCTATCCTGTTCGTGTTGTTAGGTCCCACAAGGAGAAACGTTCCTCTTATGCACCAGAAGAAGGATTGAGGTACGATGGGGTGTACAGAATTGAGAAATGTTGGCGCAAAGTTGGAATACAAGGTCATAAGGTCTGCAGGTATTTGTTTGTGAGGTGTGACAATGAGCCAGCTCCATGGACAAGTGATTTAACTGGAGACCGTCCTCGCCCACTACCTACAATTAAGGAGTTTAAGGGTGCAGTTGATATTACTGAAAGAAAGGATGATCCATCATGGGACTTCGATGAGGAAAAGGGCTGTTGGTTGTGGAAGAAGCCTCCACCACTAAGTAAGAAGCCGATGAATGTTGTGGATTCTTTTGATCCAACAAAAATGAAAATTGTCAGGCCAAAAGCTATAAAACCGTCCTTCAAAATTAAGGATAGGCTATTGAAAGAGTTTGGTTGCAATATCTGTCGCAAGGTGTTGGCTTCTCCTCTTACTACACCTTGTGCTCACAACTTCTGCAAAGGCTGCTTGGAGGGTGCCTTTGCTGGCCAAAGCTATATCAGGAACAGGACAACTCAAAGTGGACGCAGTTTGCGGACACAGAAGAACATTATGAAATGTCCTTCCTGTGCAACTGACATAGCTGAGTATCTTCAGAATCCACAGGTTAACAGGGAAATGATGGGTGTGATAGAAACACTCCAGCGACAGGCTGAACAACAGGAAGAACAGATGGAGGAGAATTCCGGAGAATCAAGTGCTAAGAGTGAAGAAAATGACAAGCCGGATGAGGAGACCGAGGTCTCAAAATCCTCTGATTCGAGTGAAAAAGTCGTGGAGGAAATTAACGAGGATGATGTGAATCCTCCACAGAAGAAGAGGAAAGGTGATGATGACAAGGCTGTGGTCAATGTGGAAGAACAGATTGATGATGCAGGAGTGGAAAGCAAAACAGTGGCTTGCAACTAG 2037 0.459 MANIITHHLPCDADGVCMVCKQKPSETETLHCKTCTTPWHAPCLPVVPTTSEMLDWLCPDCAQPSDVVAASAAPSVAGDLVSAIRAIENDPSLTEEEKRKKRQELHGGSLKEKDEVHVRRSGVLDIFDGSLNCSFCVKLPERPVTTPCGHNFCLKCFEKWVGLGKRTCSNCRTAIPPKMASNPRINAQLAIAIRMAKLARAESVGGSTAPKNYQVVLNDERPDTCYTTERARKTGKANACSGKIFVTIPKDHFGPILAEYDPNRNRGVLVGDTWEDRMECRQWGAHFPHVAGIAGQSAHGAQSVALSGGYIDDEDHGEWFLYTGSGGRDLSGNKRTNKNQSFDQKFENMNEALRTSCRKGYPVRVVRSHKEKRSSYAPEEGLRYDGVYRIEKCWRKVGIQGHKVCRYLFVRCDNEPAPWTSDLTGDRPRPLPTIKEFKGAVDITERKDDPSWDFDEEKGCWLWKKPPPLSKKPMNVVDSFDPTKMKIVRPKAIKPSFKIKDRLLKEFGCNICRKVLASPLTTPCAHNFCKGCLEGAFAGQSYIRNRTTQSGRSLRTQKNIMKCPSCATDIAEYLQNPQVNREMMGVIETLQRQAEQQEEQMEENSGESSAKSEENDKPDEETEVSKSSDSSEKVVEEINEDDVNPPQKKRKGDDDKAVVNVEEQIDDAGVESKTVACN* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3556 678 ProSiteProfiles YDG domain profile. 263 411 IPR003105 -
Mtr5g3556 678 Pfam Zinc finger, C3HC4 type (RING finger) 131 175 - -
Mtr5g3556 678 ProSitePatterns Zinc finger RING-type signature. 524 533 IPR017907 -
Mtr5g3556 678 MobiDBLite consensus disorder prediction 595 669 - -
Mtr5g3556 678 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 76 IPR013083 -
Mtr5g3556 678 ProSiteProfiles Zinc finger RING-type profile. 133 172 IPR001841 -
Mtr5g3556 678 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 7 663 - -
Mtr5g3556 678 ProSitePatterns Zinc finger PHD-type signature. 17 61 IPR019786 -
Mtr5g3556 678 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 497 618 IPR013083 -
Mtr5g3556 678 SUPERFAMILY PUA domain-like 237 433 IPR015947 -
Mtr5g3556 678 SUPERFAMILY RING/U-box 125 180 - -
Mtr5g3556 678 SUPERFAMILY RING/U-box 498 579 - -
Mtr5g3556 678 Pfam RING-type zinc-finger 509 559 IPR027370 -
Mtr5g3556 678 Pfam SAD/SRA domain 266 414 IPR003105 -
Mtr5g3556 678 Gene3D - 234 428 IPR036987 -
Mtr5g3556 678 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 7 663 IPR045134 -
Mtr5g3556 678 Coils Coil 580 607 - -
Mtr5g3556 678 SUPERFAMILY FYVE/PHD zinc finger 7 64 IPR011011 -
Mtr5g3556 678 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 198 IPR013083 -
Mtr5g3556 678 ProSiteProfiles Zinc finger RING-type profile. 509 566 IPR001841 -
Mtr5g3556 678 SMART G9a_1 258 415 IPR003105 -
Mtr5g3556 678 MobiDBLite consensus disorder prediction 592 678 - -
Mtr5g3556 678 ProSiteProfiles Zinc finger PHD-type profile. 14 64 IPR019787 -
Mtr5g3556 678 SMART PHD_3 16 62 IPR001965 -
Mtr5g3556 678 SMART ring_2 133 171 IPR001841 -
Mtr5g3556 678 SMART ring_2 509 566 IPR001841 -
Mtr5g3556 678 SMART ring_2 17 61 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3556 Mtr-Chr5 44382536 44387471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3556 5 601 C2H2 Transcription Factor Family AT5G39550 60.626 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3556 K10638 - gmx:100781044 898.271