Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3550 ATGTCACTCTGCTACCTTAAGTCAATTCCTGGTTTGCTTTCAAAGGTTCCTGTGATTGTCATGCAAAGACCACAACCACAGCCGCCACAAGCATTGATGCAAAACAGATATGTTGAAACAGTTATTCATGAAAAGTTGAAAAGTGTAAGGATCACATGGATTCATGGAGGCACCAATGTTTCTATTGCAGGATCATGGAACAACTGGGAGACAGTGGAGGCCTTGCTAAGAGTAGGTCAACATTTTGTGATTGTTAAAACACTTCCAATAAGTATCTACTATTACCGTTTCATTGTAGATGGACAATGGACACATGCTCCTGAGTTTCCATCAGATCTTGATGATTCTGGTTATGTCTACAATATATTGGATTTGCAGGATTATATCCCACAAAGACTGCAAAAATCTGAAGATCCAGAATCGCCGCCATCGAGTTACGATAACATATTCTTAAATGAAGATGAATTCAACAAGCCTCCCCCAGAATTACCACCACAAATACCAGTGACAATAACACAAGAAGAGGCTTCAACAAGCAATATTGATCAAGTCCCTAGTTCTACACATGTGGATCTAAATCATCTATACATCAACAAATCTGATGGTGATCAATTTGTAACACTAAGATCAACTCATAGGTTTCAACACAAATTTGTCACTACAATACTTTACAAGTCCCTTCAAAGGGAAAGATGA 696 0.3836 MSLCYLKSIPGLLSKVPVIVMQRPQPQPPQALMQNRYVETVIHEKLKSVRITWIHGGTNVSIAGSWNNWETVEALLRVGQHFVIVKTLPISIYYYRFIVDGQWTHAPEFPSDLDDSGYVYNILDLQDYIPQRLQKSEDPESPPSSYDNIFLNEDEFNKPPPELPPQIPVTITQEEASTSNIDQVPSSTHVDLNHLYINKSDGDQFVTLRSTHRFQHKFVTTILYKSLQRER* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3550 231 Pfam Glycogen recognition site of AMP-activated protein kinase 49 126 IPR032640 -
Mtr5g3550 231 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 14 231 IPR043554 -
Mtr5g3550 231 PANTHER SNF1-RELATED KINASE REGULATORY SUBUNIT BETA-2 14 231 - -
Mtr5g3550 231 SUPERFAMILY E set domains 46 126 IPR014756 -
Mtr5g3550 231 SMART AMPKBI_2 139 227 IPR006828 GO:0005515
Mtr5g3550 231 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 157 225 IPR006828 GO:0005515
Mtr5g3550 231 Gene3D - 133 227 - -
Mtr5g3550 231 SUPERFAMILY AMPKBI-like 129 226 IPR037256 -
Mtr5g3550 231 CDD E_set_AMPKbeta_like_N 48 124 - -
Mtr5g3550 231 Gene3D Immunoglobulins 40 128 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3550 Mtr-Chr5 44322946 44325686 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3550 48 127 Protein tyrosine phosphatase (PTP) family AT3G01510 33.735 1.37e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3550 K07199 - gmx:100786269 296.975