Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3549 ATGGATCCCAATGACCAAAAGAAGAATAATAATAAGTTTGATGTTGGTAGGATACATCAGAATACTAGGGCAAATTCCATGAAAGCCATAGAGAAGAAGAAAAGCTTAGCATCAATTTCTAAGTCTTGTAAAGTTTATGAAAAACCAAAGGGTCGTCATCATGATGAAGGATCAACAAGTTCAAAAATTCACAAGTGTGAATTATGTAACAAAATTTTTAGGTGTGGAAAAGGATTAGGTGGTCACAAAAGAATCCATAGTCAAGCCCTAGGGAAAGAGGGTGAGTCGAAAGCAGAGGCTAATTGCAATTCTAATGATGTAAAATTAAGTTGTGATGTTTGCAAAAAGAACTTCCAATCCAATAAGGCTTTACATGGTCACATGAGATCTCATCCTGAAAGGGAATGGCGGGGTATGAACCCTAATAAGGATAATAATATTGATTATCATGATTATGATCAAGATCAATATTTTCTTAGTGCATTCAATTCCAAGGAATTGGTTATTGATGAGGAATCAAAATCTTGGCCACGAAGATTGTTTAAAACCTGTAAAAGAGGCCGTTCGAGTGGTGAAGTTGTTATTGCTGCTCAAATACTCGTGTATATGTCAACAGATAAACATTTACATGACACCTTCGATGAGGATTTGGATAATGAAGATAAGAAGGAGAATGTTCTACCTAGTACTAGTGGTCTTGTTGGTGACATTGATGAAACAAAATTGAAGAATGACAATAACAAAAGAAGGAAGAAGCTGGTGAAATTGATGAATCCATATTCAACATCAAAAGATAATGTCTTATTGGACTAA 813 0.3481 MDPNDQKKNNNKFDVGRIHQNTRANSMKAIEKKKSLASISKSCKVYEKPKGRHHDEGSTSSKIHKCELCNKIFRCGKGLGGHKRIHSQALGKEGESKAEANCNSNDVKLSCDVCKKNFQSNKALHGHMRSHPEREWRGMNPNKDNNIDYHDYDQDQYFLSAFNSKELVIDEESKSWPRRLFKTCKRGRSSGEVVIAAQILVYMSTDKHLHDTFDEDLDNEDKKENVLPSTSGLVGDIDETKLKNDNNKRRKKLVKLMNPYSTSKDNVLLD* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3549 270 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 87 IPR013087 -
Mtr5g3549 270 Gene3D Classic Zinc Finger 57 143 - -
Mtr5g3549 270 SMART c2h2final6 64 86 IPR013087 -
Mtr5g3549 270 SMART c2h2final6 109 131 IPR013087 -
Mtr5g3549 270 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 230 IPR044653 GO:0003700
Mtr5g3549 270 ProSitePatterns Zinc finger C2H2 type domain signature. 111 131 IPR013087 -
Mtr5g3549 270 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 1 230 - -
Mtr5g3549 270 SUPERFAMILY beta-beta-alpha zinc fingers 62 131 IPR036236 -
Mtr5g3549 270 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Mtr5g3549 270 MobiDBLite consensus disorder prediction 1 33 - -
Mtr5g3549 270 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 136 IPR013087 -
Mtr5g3549 270 Pfam C2H2-type zinc finger 111 133 - -
Mtr5g3549 270 Pfam C2H2-type zinc finger 64 87 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3549 64 141 C2H2 Transcription Factor Family AT2G26940 33.010 5.23e-12 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr5g3549 zf-C2H2_6 7.8e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3549 - - mtr:MTR_5g098470 543.888