Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3538 ATGATTGAGAAAATGGAGAGGGAAGAAGCAAAGCAAGTATCAGATGAAGAAGCTTTGTTTTTTGCCATGGAACTATCAGGTGCTTCTGCTGCTCCAATGGTTCTAAAATCAGCTTTAGAACTTGGCATCATTGAAATTATAGCCAAAGCTGGTCCAAATGCTCATCTTTCATCTTCAAACATTGCTTCTCAAATCCCTTCTATAAAAAATCCAGATGCACCTTCTATGTTGGACCGATTATTGCGTCTATTGGCTAGCTACAAAATTCTTACTTGCTCCATTCAACATCAAGATGGAGATTCTATTGAAAGGCTTTATGGTCTTCACCCTCTTGCTAAGTATTTTGTCAATAATCAAGATGGTGTCTCCATGATTTCTTCATTTCTCATGCAACATGACAAAGTCCTCAAAGACATGTGGTACCACTTAACAGATTCAATTCAGGAGGGTGGCCTTCCATTTTACAATGCTTATGGAATGACATCCTTTGAATTCCATAGCACAGATCAAAGGTCCAATAAGATTTTCAACAAGGGCATGTCTGATTACTCTAGTATCATAATGAACAAAGTTCTTGAAACATATTCAGGTTTTGAGGGTCTTGGATCTATTGTTGATGTTGGTGGTGGAATTGGAACTGTTACTAACATGATTGTCTCTAAGTATCCCAACATTAAAGCCATTAATTTTGACTTGCCCCATGTCATTAATGAAGCTCCATCTTATCCAGTGTCTGGTGTAGGTGTGGAACATGTTGGTGGAGACATGTTTGTGAGTGTTCCAAAAGCTGATGCCATTTTCATGAAGTGGATATGTCATGATTGGAATGATGAGCAATGCTTGAAATTTTTGAAGAATTGCTATGATTCTCTTCCTGCCACAGGGAAGGTGATTGCAGTGGAATGCATTATTCCAATAATTCCTGACTCAAACTTGGCCTCAAAATCTGTTTTTCAAATGGATGCTATCATATTGTGTCATAGCTCAGGTGGAAAAGAAAGAACAGAAAAAGAGTTTGAGGCTTTAGCTAAAGGAGCTGGATTTGAAGGATTTCAAATTGCATGTTGTGCTTTCAACATGTATGTCATGGAATTTCTTAAGAATGCTTAA 1110 0.3775 MIEKMEREEAKQVSDEEALFFAMELSGASAAPMVLKSALELGIIEIIAKAGPNAHLSSSNIASQIPSIKNPDAPSMLDRLLRLLASYKILTCSIQHQDGDSIERLYGLHPLAKYFVNNQDGVSMISSFLMQHDKVLKDMWYHLTDSIQEGGLPFYNAYGMTSFEFHSTDQRSNKIFNKGMSDYSSIIMNKVLETYSGFEGLGSIVDVGGGIGTVTNMIVSKYPNIKAINFDLPHVINEAPSYPVSGVGVEHVGGDMFVSVPKADAIFMKWICHDWNDEQCLKFLKNCYDSLPATGKVIAVECIIPIIPDSNLASKSVFQMDAIILCHSSGGKERTEKEFEALAKGAGFEGFQIACCAFNMYVMEFLKNA* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3538 369 Gene3D Vaccinia Virus protein VP39 116 367 IPR029063 -
Mtr5g3538 369 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 23 367 IPR016461 GO:0008168
Mtr5g3538 369 CDD AdoMet_MTases 204 300 - -
Mtr5g3538 369 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 120 365 IPR029063 -
Mtr5g3538 369 SUPERFAMILY "Winged helix" DNA-binding domain 14 118 IPR036390 -
Mtr5g3538 369 Pfam O-methyltransferase domain 140 349 IPR001077 GO:0008171
Mtr5g3538 369 Pfam Dimerisation domain 33 85 IPR012967 GO:0046983
Mtr5g3538 369 PANTHER BNAA10G07270D PROTEIN 11 368 - -
Mtr5g3538 369 Gene3D - 2 115 IPR036388 -
Mtr5g3538 369 PANTHER O-METHYLTRANSFERASE 11 368 IPR016461 GO:0008168
Mtr5g3538 369 PIRSF O-mtase 1 367 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3538 Mtr-Chr5 44191357 44195138 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3538 12 367 Monolignol Biosynthesis Gene Families AT5G54160 62.360 7.13e-170 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3538 K13066 - gmx:100780100 498.434