Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3535 ATGGCGCCGACGAAGGAGAGAGCATCTAGGGTTAGCCGAAACTCTGATTTGATCAGAGGGATTGGAAAGTTCTCAAAGTCACAGATGTATCACAAGAAAGGTATCTGGGTTATTAAGGCCAAAAATGGTGGCGTTTTTCCTCATCATGATCCTAAACCTAAGCCCGAAACTGCTGTTGAAAAACCACCAAAATTTTACCCTGCTGATGATGTGAAGAAACCTCTTCGTAACAAGCATAAGCCTAAGCAGACTAAGCTCAGGGCAAGCATCACTCCCGGCACAGTGCTGATTCTTCTTGCTGGTAGATTTAAGGGCAAGAGGGTGGTGTTTTTGAAGCAGCTTCCTTCTGGATTGCTTCTTGTAACTGGTCCCTTCAAGATCAACGGAGTTCCTTTGAGATGTGTGAATCAGGCCTATGTGATTGGTACATCAACCAAAGTCGATATCTCCGGTGTTAATGTGGATAACCTTGATGACAAGTACTTTTCAAAGGAAGCCCCAAAAAAGAAGAGCAAGGGAGAAGGCGAATTCTTTGAGTTAGACAAGGAGGAGAAAAAGGTGTTACCTCAGCAGAAGAAAGATGACCAGAAAACAGTGGACGCTGCATTGATAAAAGCTATTGATAGCGTTCCAGACTTGAAAACTTATCTTGGTGCCAGGTTTTCTCTCAAGGCAGGTGTGAAGCCACACGAACTAGTTTTCTAG 705 0.4397 MAPTKERASRVSRNSDLIRGIGKFSKSQMYHKKGIWVIKAKNGGVFPHHDPKPKPETAVEKPPKFYPADDVKKPLRNKHKPKQTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRCVNQAYVIGTSTKVDISGVNVDNLDDKYFSKEAPKKKSKGEGEFFELDKEEKKVLPQQKKDDQKTVDAALIKAIDSVPDLKTYLGARFSLKAGVKPHELVF* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3535 234 SUPERFAMILY Translation proteins SH3-like domain 88 174 IPR008991 -
Mtr5g3535 234 Gene3D - 88 171 IPR014722 -
Mtr5g3535 234 PANTHER 60S RIBOSOMAL PROTEIN L6 1 234 - -
Mtr5g3535 234 PANTHER 60S RIBOSOMAL PROTEIN L6 1 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Mtr5g3535 234 Pfam Ribosomal protein L6e 127 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Mtr5g3535 234 MobiDBLite consensus disorder prediction 46 85 - -
Mtr5g3535 234 CDD KOW_RPL6 82 234 IPR041997 -
Mtr5g3535 234 Pfam Ribosomal protein L6, N-terminal domain 3 62 IPR005568 GO:0003735|GO:0005840|GO:0006412
Mtr5g3535 234 MobiDBLite consensus disorder prediction 46 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3535 Mtr-Chr5 44136310 44137063 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3535 3 234 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 78.448 4.62e-117 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3535 K02934 - gmx:100785356 399.053