Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr5g3531 | ATGATCGTTCCACAATCTCAACTCATCAGATATGATTCTGCTGTTGGTTCATCACGCGAGACTTCAGCAGCGCCTGCAATTTTGCCTTCTATTCAGAATGGTATTCCAATGCTTCTAATTTTGCAGTCTGCTGGTGGTTCATCACAAGATACTTCAGCAGCGCCTGCAAGTTTGCCTTCGGCGCAGAATGGTATGCCAATGCTTCTAATATTGCCGGCTGTTGGTTCATCACACCAGACTTCAGCAGTGCCTGCAAGTTTGCCTTCTGCGCATAATGGTTCATGGCAACTTCAAATTTATGGCAATGAGACTAAAATAATGTTGCCTAACCAAACCAAAGTCATCAAAGCTTTCAGATGTGAAGTGTGTGAAATTGAAGTCAATAGCCAAGTCTCTTTAGAAAATCACATAGCTGGAAAGAAACACAAGAAAAATTTGCAACGGCAGACTAATCCTACAGTTGCATCTCATGCGAATGTACAAACTGACACAAGTAGTATCCAAGGTCAAGCATTAATTGGTCCTGTACCCGAGCAATCAGAGCCTAAGAAACAGGTTGATAGTATACAAGGGCAAGCATTAATTGGTCCTGTGGCCGAACAATCAGAGCCTAAGAAACAGGTTGATTCTGTTAAGAATGTACAAACTGACACAAGTAGTATCCACGGACAAGCGTTAATTGGTCCTGTAGCCGAACAATCAGAGCCTAAGAAACAGGTTGATTCTGTTAATAATGTACAAACTGACACAAGTGGTATCCAAGGACAAGAGTTAATTGGTCCTGTAGCCGAACACTCAGAGCCTAAGAAACAGGTTGATTCTTTTAAGAATGTACAAACTGACACAAGTAGTATCCAAGGACAAGCGTTAATTGGTCCTGTAGCCGAACAATCAGAGCCTAAGAAACAGGTTGATTCTGTTAAGAATGTACAAACTGACACAAGTGGTATCCAAGGACAAGCGTTAATTGGTCCTGTAGCCGAACACTCAGAGCCTAAGAAACAGGTTGATTCTGTTAAGGTTTGCTCAACATGCAATGTTGTGTGCGTTGGTCAAGATACATATAACAAACATGTTGCTGGGAGAAAGCATGCGGCTAAGGTTGCCTTGAAGTCTAATGATGGCATTGGTCCATCTATTGCCGAACTCAAGCGTAAAGGTGATGCTCCAATTGAAAAAGCTGCTAAGAAAATCAAGGTTGCTGAATCTGTATGGTGTGAATTTTGCAAGATTAATTGTAACAGCAGGGATAGCTACACTGCACACATATCCGGTAAGAAACACTTGAGGAACTTGGAGAAATTGTCAAATCCAAAAGTCGGTGTTGGCAGCGGTGCCACTCCCACCACCACCGCAACAATTACTATAATTGAGACACAGGAAAAACCAGATTCCGATAACCTAAAAGCAAAGCAGGTACCAGAACTTGATATCGAGGCAGAGAAACGTAAAGCTGTGGAAAGAGGAGCTGCAGTTAATGATATTAAAATGTGCACTTTATGCAATGTGGTGTGTAATAGCCAGGCAAATTTAAATACTCACCTTAGTGACCATAATCATGCTGCTATGGTGAAGAAGGCAGGGTTAATCACTGGTTGA | 1599 | 0.4196 | MIVPQSQLIRYDSAVGSSRETSAAPAILPSIQNGIPMLLILQSAGGSSQDTSAAPASLPSAQNGMPMLLILPAVGSSHQTSAVPASLPSAHNGSWQLQIYGNETKIMLPNQTKVIKAFRCEVCEIEVNSQVSLENHIAGKKHKKNLQRQTNPTVASHANVQTDTSSIQGQALIGPVPEQSEPKKQVDSIQGQALIGPVAEQSEPKKQVDSVKNVQTDTSSIHGQALIGPVAEQSEPKKQVDSVNNVQTDTSGIQGQELIGPVAEHSEPKKQVDSFKNVQTDTSSIQGQALIGPVAEQSEPKKQVDSVKNVQTDTSGIQGQALIGPVAEHSEPKKQVDSVKVCSTCNVVCVGQDTYNKHVAGRKHAAKVALKSNDGIGPSIAELKRKGDAPIEKAAKKIKVAESVWCEFCKINCNSRDSYTAHISGKKHLRNLEKLSNPKVGVGSGATPTTTATITIIETQEKPDSDNLKAKQVPELDIEAEKRKAVERGAAVNDIKMCTLCNVVCNSQANLNTHLSDHNHAAMVKKAGLITG* | 533 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr5g3531 | 532 | PANTHER | ZINC FINGER RNA-BINDING PROTEIN | 107 | 149 | - | - | |
| Mtr5g3531 | 532 | PANTHER | ZINC FINGER RNA-BINDING PROTEIN | 234 | 528 | - | - | |
| Mtr5g3531 | 532 | Pfam | Zinc-finger of C2H2 type | 118 | 142 | - | - | |
| Mtr5g3531 | 532 | Pfam | Zinc-finger of C2H2 type | 405 | 428 | - | - | |
| Mtr5g3531 | 532 | Pfam | Zinc-finger of C2H2 type | 341 | 364 | - | - | |
| Mtr5g3531 | 532 | Pfam | Zinc-finger of C2H2 type | 498 | 515 | - | - | |
| Mtr5g3531 | 532 | Gene3D | Classic Zinc Finger | 473 | 527 | - | - | |
| Mtr5g3531 | 532 | Gene3D | Classic Zinc Finger | 326 | 372 | - | - | |
| Mtr5g3531 | 532 | Gene3D | Classic Zinc Finger | 104 | 150 | - | - | |
| Mtr5g3531 | 532 | SUPERFAMILY | beta-beta-alpha zinc fingers | 402 | 435 | IPR036236 | - | |
| Mtr5g3531 | 532 | SUPERFAMILY | beta-beta-alpha zinc fingers | 324 | 371 | IPR036236 | - | |
| Mtr5g3531 | 532 | Gene3D | Classic Zinc Finger | 392 | 438 | - | - | |
| Mtr5g3531 | 532 | PANTHER | SI:CH211-197H24.6 | 234 | 528 | - | - | |
| Mtr5g3531 | 532 | PANTHER | SI:CH211-197H24.6 | 107 | 149 | - | - | |
| Mtr5g3531 | 532 | SMART | c2h2final6 | 118 | 142 | IPR013087 | - | |
| Mtr5g3531 | 532 | SMART | c2h2final6 | 340 | 364 | IPR013087 | - | |
| Mtr5g3531 | 532 | SMART | c2h2final6 | 496 | 518 | IPR013087 | - | |
| Mtr5g3531 | 532 | SMART | c2h2final6 | 404 | 428 | IPR013087 | - | |
| Mtr5g3531 | 532 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 120 | 142 | IPR013087 | - | |
| Mtr5g3531 | 532 | SMART | ZnF_U1_5 | 115 | 149 | IPR003604 | GO:0003676|GO:0008270 | |
| Mtr5g3531 | 532 | SMART | ZnF_U1_5 | 337 | 371 | IPR003604 | GO:0003676|GO:0008270 | |
| Mtr5g3531 | 532 | SMART | ZnF_U1_5 | 401 | 435 | IPR003604 | GO:0003676|GO:0008270 | |
| Mtr5g3531 | 532 | SMART | ZnF_U1_5 | 493 | 527 | IPR003604 | GO:0003676|GO:0008270 | |
| Mtr5g3531 | 532 | SUPERFAMILY | beta-beta-alpha zinc fingers | 98 | 149 | IPR036236 | - | |
| Mtr5g3531 | 532 | SUPERFAMILY | beta-beta-alpha zinc fingers | 492 | 526 | IPR036236 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mtr5g3531 | Mtr-Chr5 | 44083732 | 44088279 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mtr5g3531 | 293 | 524 | C2H2 Transcription Factor Family | AT5G61190 | 26.860 | 1.44e-14 | 75.1 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Mtr5g3531 | zf-met | 2.1e-07 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr5g3531 | - | - | mtr:MTR_5g097950 | 1021.54 |