Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3516 ATGCCTGCTGAGAATTGGGATGGAGAAGTAGAACCATTTGCTGAAGTTGATCCAACAGGAAGATATGGTCGTTACAATGATTTACTTGGTAGTGGAGCTGTGAAGAGAGTATACAGAGGTTTTGATCAAGAAGAAGGAATTGAAGTTGCATGGAATCAAGTTAAACTTCGGAATTTCAGCAACGATCCTGTCCTTATCAATCGTCTTCATTCTGAGGTTGAATTGCTCAGAAATCTCAGTAACAAGTATATCATTGTTTGTTACAGTGTGTGGAAAGACGATGAACGTGGTAATATCAATTTTATTACTGAGGTTTGTACTTCCGGGAACCTTAGGGATTATAGGAAGAAACATCGACATGTTTCGATTAAGGCGTTTAAGAAATGGTCAAAACAAGTTCTTGAAGGATTGGAGTATCTTCATACACATGATCCCTGTATTATCCACAGAGATCTTAATTGCAGTAATATCTTTGTTAATGGGAACATTGGCCAGGTAAAAATTGGTGATCTGGGATTGGCTGCAATAGTAGGAAGGACCCATGCAGCACATTCAATTTTAGGGACTCCTGAGTACATGGCACCTGAGCTGTATGAGGAAGATTACACTGAAATGGTAGACATATACTCATTTGGAATGTGTTTGCTTGAAATGGTTACAATGGAGATACCATATAGTGAATGTGACAGTGTAGCCAAGATATACAAAAAGGTTACAATGGGAATTAAGCCTCAAGCCTTGAGCAATGTCAGAGAACCAGAAGTGAAGGCATTCATTGAGAAATGCATTGCACAACCAAGGGCAAGACCTTCAGCTACTGATCTTCTTAAGGATCCTTTCTTTTTTGAACTCAACAGTGATGAAGAATCAACACTTATCACTTGA 885 0.3887 MPAENWDGEVEPFAEVDPTGRYGRYNDLLGSGAVKRVYRGFDQEEGIEVAWNQVKLRNFSNDPVLINRLHSEVELLRNLSNKYIIVCYSVWKDDERGNINFITEVCTSGNLRDYRKKHRHVSIKAFKKWSKQVLEGLEYLHTHDPCIIHRDLNCSNIFVNGNIGQVKIGDLGLAAIVGRTHAAHSILGTPEYMAPELYEEDYTEMVDIYSFGMCLLEMVTMEIPYSECDSVAKIYKKVTMGIKPQALSNVREPEVKAFIEKCIAQPRARPSATDLLKDPFFFELNSDEESTLIT* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3516 294 Gene3D Phosphorylase Kinase; domain 1 8 104 - -
Mtr5g3516 294 ProSiteProfiles Protein kinase domain profile. 23 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g3516 294 CDD STKc_WNK 21 281 - -
Mtr5g3516 294 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g3516 294 Gene3D Transferase(Phosphotransferase) domain 1 106 286 - -
Mtr5g3516 294 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK11-RELATED 4 284 - -
Mtr5g3516 294 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 4 284 - -
Mtr5g3516 294 SUPERFAMILY Protein kinase-like (PK-like) 18 281 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3516 Mtr-Chr5 43915813 43919732 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3516 7 281 MAP Kinase Kinase Kinase AT5G55560 77.455 1.64e-168 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Mtr5g3516 Pkinase 9.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3516 K08867 - gmx:100798280 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3516 5 43915813 43919732 Mtr5g3516 5 43915813 43919732 ECH