Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3514 ATGGTTTTGTCGCAACAAAATGTTGATCACAATGATTCTCCTTCTGAAGTACAACATCGAGTGAATCATCAGAGGGAGATCATATTGTCACGAGAGACTAATGATGTAGCTATGGCTTGTGAGTTGGTATTATCACATTCTTCACCACTCATGCAACACTCGCAGAGCCCTAATACTCCTTCACGTGAGTTACCTCTGATACAATCTAATCAATACACTCGCTCAATCATACGTGAAATGGTAAGAAAAGATGGATATAAGTGGAAAAAATATGGTGAGAAAAACATTAAGAAGAATGAACATAAAAGAGCCTATTACAAATGCACACATTCAGATTGTCAGGCAAAAAAGAAATTTCATTGGTCAAATGATGGGACCGTCGAATATTTCAGTTACACCAATCCGCACAATCATCCTAATCCTCAATCAAGCATTGTACCACCAATTGATCATGTTCTTCCTATTGTTGAACACGGACCACATCTACCCTATTTGGCCGGTGTGGAAGTTCAAGACAACAATACTAATGCTACTAGAGCTAGCGTGTTAACTGGTGAACCTCACCTTGTTGTTCAGACTTCAAGTGCAAATGAAGTTGTAAATGATGCATATCGCTGGCGCAAATACGGAAGAAAAATGGTTAATGGAAAAACAATTCAAAGATTAAATGAGCATGATACTCCCAGTGAAAAGTCTGATGCAAAACTTGGCCACATCAGACTTAAATAG 729 0.3841 MVLSQQNVDHNDSPSEVQHRVNHQREIILSRETNDVAMACELVLSHSSPLMQHSQSPNTPSRELPLIQSNQYTRSIIREMVRKDGYKWKKYGEKNIKKNEHKRAYYKCTHSDCQAKKKFHWSNDGTVEYFSYTNPHNHPNPQSSIVPPIDHVLPIVEHGPHLPYLAGVEVQDNNTNATRASVLTGEPHLVVQTSSANEVVNDAYRWRKYGRKMVNGKTIQRLNEHDTPSEKSDAKLGHIRLK* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3514 242 Gene3D WRKY domain 188 233 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr5g3514 242 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 173 221 IPR044810 GO:0003700
Mtr5g3514 242 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 3 173 IPR044810 GO:0003700
Mtr5g3514 242 MobiDBLite consensus disorder prediction 221 242 - -
Mtr5g3514 242 ProSiteProfiles WRKY domain profile. 195 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr5g3514 242 SUPERFAMILY WRKY DNA-binding domain 77 141 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr5g3514 242 MobiDBLite consensus disorder prediction 223 242 - -
Mtr5g3514 242 SUPERFAMILY WRKY DNA-binding domain 194 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr5g3514 242 SMART WRKY_cls 82 140 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr5g3514 242 ProSiteProfiles WRKY domain profile. 77 141 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr5g3514 242 PANTHER WRKY TRANSCRIPTION FACTOR 1 173 221 - -
Mtr5g3514 242 PANTHER WRKY TRANSCRIPTION FACTOR 1 3 173 - -
Mtr5g3514 242 MobiDBLite consensus disorder prediction 1 21 - -
Mtr5g3514 242 Pfam WRKY DNA -binding domain 201 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr5g3514 242 Pfam WRKY DNA -binding domain 83 139 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr5g3514 242 Gene3D WRKY domain 67 142 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3514 Mtr-Chr5 43904733 43906056 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3514 47 216 WRKY Transcription Factor Family AT2G04880 28.761 2.42e-23 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mtr5g3514 WRKY 2.2e-16 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3514 - K18834 mtr:MTR_4g021780 163.31