Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3513 ATGGTTTTGTCACAAGAAAGTGCCGATCACAACGTTTCTTCTGATAAAGTACAGCAGCAAGTGAGTCCACAGAGGGAGATTGCATTGTCACAAGGGATTGATGATGTAGCTAAAAATGAAGTGTCGGATTCTGATGCTATGGCTTGTGACTTGGTATCGTCATACTCTTCACCGCCCGAGCAACATTCACAGAGCCCCAAGACTCCTTCACATGAATTGCCTCCGATGCAATCTGGTCAAGACAGACCCTCCATAATACGTGATAAGGTCACAAAAGATGGCTATAAATGGCGAAAGTATGGCCAGAAAAACGTTAAGGGGAGTGAATTTAAAAGGAGTTATTACAAATGTACTTATTCAGACTGCCCTGCAAGGAAGCAATTTCAGCTATCACATGATGGAAACTACGAAGATTGCAGTTACATCGGTCAGCATAATCATCCCAAACCTGAATCGAACACTGTACCACCGGACACCGTATCACCGGTTGATCGTGTTCTTCCTGTTGTTGAAAAGGGACCACCCCAATCCTCTTTTGCTGATGTGGAAGGTCAAGAAAATTCATCTGTTGAGTATGAATCTATGCCTCGACAGGTCACGCCTTTGCGTTTCCATCCACCTTCAAAAGTTTCGCGAACTGATGAGTCAAAGCGGCTGAAGAAAGACAATAGTAACACCGATGCGACTGGAGCTGATGTGTTAACTGGTGAATCTCGCGTTATTGTTCGAACTACAAGTGAGTCTGGAATTGTGAATGATGGGTATCGCTGGCGCAAATATGGTCAGAAAATGGTTAAAGGCAACACAAATCCAAGAAATTACTATCGATGCTCAAGTCCCGGATGCCCCGTAAAAAAGCATGTTGAGAAGTCCTCTCAAAACACAACAACTGTCATAACTACCTATGAGGGTCAACATGATCATGCACCTCCCACGGGAAGAGGTGTCCTTGATAATACAGCTGTAAAATTGACTCCAATTCGAGCGACCATCCTTCCTAACCAGAGTCTTGAAAGTGAATTAAACGAGGAAGAGCAACGAAATGAAGATCCTAGTACCAAAGAAGATTCTATCAGCGATGCCATGATACGTGATTCAAGTTTGAAAGTTCCATGCAGATTAAGTGAACATGACACTCCTAGTACAACATCTGTTGCAGAACCTGCCCAAAGTTGA 1176 0.4354 MVLSQESADHNVSSDKVQQQVSPQREIALSQGIDDVAKNEVSDSDAMACDLVSSYSSPPEQHSQSPKTPSHELPPMQSGQDRPSIIRDKVTKDGYKWRKYGQKNVKGSEFKRSYYKCTYSDCPARKQFQLSHDGNYEDCSYIGQHNHPKPESNTVPPDTVSPVDRVLPVVEKGPPQSSFADVEGQENSSVEYESMPRQVTPLRFHPPSKVSRTDESKRLKKDNSNTDATGADVLTGESRVIVRTTSESGIVNDGYRWRKYGQKMVKGNTNPRNYYRCSSPGCPVKKHVEKSSQNTTTVITTYEGQHDHAPPTGRGVLDNTAVKLTPIRATILPNQSLESELNEEEQRNEDPSTKEDSISDAMIRDSSLKVPCRLSEHDTPSTTSVAEPAQS* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3513 391 MobiDBLite consensus disorder prediction 376 391 - -
Mtr5g3513 391 ProSiteProfiles WRKY domain profile. 246 311 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr5g3513 391 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 386 IPR044810 GO:0003700
Mtr5g3513 391 SMART WRKY_cls 91 149 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr5g3513 391 SMART WRKY_cls 251 310 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr5g3513 391 MobiDBLite consensus disorder prediction 50 77 - -
Mtr5g3513 391 MobiDBLite consensus disorder prediction 333 391 - -
Mtr5g3513 391 MobiDBLite consensus disorder prediction 340 362 - -
Mtr5g3513 391 ProSiteProfiles WRKY domain profile. 86 150 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr5g3513 391 Gene3D WRKY domain 84 151 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr5g3513 391 Gene3D WRKY domain 236 312 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr5g3513 391 MobiDBLite consensus disorder prediction 208 225 - -
Mtr5g3513 391 PANTHER WRKY TRANSCRIPTION FACTOR 1 1 386 - -
Mtr5g3513 391 SUPERFAMILY WRKY DNA-binding domain 243 311 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr5g3513 391 MobiDBLite consensus disorder prediction 180 195 - -
Mtr5g3513 391 MobiDBLite consensus disorder prediction 50 88 - -
Mtr5g3513 391 MobiDBLite consensus disorder prediction 1 27 - -
Mtr5g3513 391 MobiDBLite consensus disorder prediction 142 230 - -
Mtr5g3513 391 SUPERFAMILY WRKY DNA-binding domain 88 150 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr5g3513 391 MobiDBLite consensus disorder prediction 1 34 - -
Mtr5g3513 391 Pfam WRKY DNA -binding domain 92 148 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr5g3513 391 Pfam WRKY DNA -binding domain 252 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3513 Mtr-Chr5 43896481 43900052 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3513 76 322 WRKY Transcription Factor Family AT2G04880 43.431 8.13e-66 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mtr5g3513 WRKY 4.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3513 K18834 - gmx:100782726 355.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3513 5 43896481 43900052 Mtr5g3513 5 43896481 43900052 ECH