Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3508 ATGAGTTTTGTGAAGTGGGTTTGTGAAGAAAAGTTGGTAAATTTTTCAAGGATGTCTGTGATTGTGAATGGAAGATGTTCTTCACCAAAAATCAAGTCTTGGAAAGGAAATGAGTCTTTGCATGTGTCTAATTCTAGTACAACATGTAGGAGGAAACTGTTTCTGTTGCTGTTTTGGGTTTTTGGTGTTGCTGTTGTTATTGGGAGTGTTTGGTTTGTGTTTAGTACCTTCAACTTTAAGCATTTGATTAAAGAAACAGCTTGTGAAAAGAGTGCACAAACCTTGTTACAACGTTACAATGTCAGTAAGAAACAGCTTCATGTTTTGGCTTCCTTGTTCTCAGGATCAGATCAGATTTTGTCCAATTGTATTGATGAAAGGAGACTTCAAATGTTGTTAAGTAGTGACATAATCAACACTCCACAGTTAATGTGTCCAAAGAATCTAGACTTACAAAAGGAGCATAGATATGTTGCAGAATCTGTAGAACAATGTCCAATTCTTGATGATTTTGTTCACATGAGGCTTGGATTATCATTCCCTTGGAAAGCATATGTAACATTGGTCTCTGCACTTTTGTCCGATTTGGTTAGCGTTTTGCTCCGTGGAAAGGTGATGAGGGTGTGTGCGGTTGTGGATAATGTGAATTTATCTAGTTTAATTAAAGGATGTTGTTTAGTCCTTATTGGCATTATACTGTCCCACAAGTTGTCTGGCTTCTGTTTACTAAGGAGGAATCAAAAGCAGAAGGTAGTTAAGGAGCATCCAACTGCTCCACAAAAGCGGATTCAACATTGTATGCTCGGTCATTCAAAGGCTACTGGTTGGCGGAGAAAAAAGTTGCTAGTTATTTTTATGTCAGTTGGAATCCTTGGTTCTGCATGGTTATTTAGGTACATGAGTTCGGACATTGCGCAAAGAAGAGAAGAAATGCTTGCCACTATGTGTGACGAGAGAGCCCGTATGTTGCAAGATCAATTTAACGTGAGCATGAACCATGTCCATGCTCTCGCTATTCTTGTGTCTACATTTCACCATGGTAAACATCCTTCCGCAGTTGACCAGAAAATATTTGGAGAATATACAGAGAGTTCGGCATTTGAGAGACCACTTACTAGCGGTGTTGCTTATGCTTTGAAAGTTCTCCATTCTGATAGGATGCATTTTGAGAAGCAGCATGGTTGGACAATTAAGAAAATGGAAACTGAGAACGAGGCATTAGTTCAAGAATGTATTCCAGAAAACTTGGATCCAGCGCCCATTCAAGATGAATATGCACCAGTCGTATTTGCTCAAGAAACGGTTTCTCATATTGTATCCATCGACATGATGTCAGGGAAGGAGGATCGTGAGAATATTTTGCGAGCAAGGGCATCTGGAAAAGGGGTTCTTACATCCCCTTTTAAACTACTAAAGTCCAATTACCTCGGTGTTGTACTTACATTTGCTGTCTATGACTCTAAGCTTCCTCCAGATGCTACACCTGAACAGCGTATTGAAGCTACTGTGGGGTATCTGGGTGCATCCTATGATGTTCCATCACTGGTGGACAAGCTTCTTCACCAGCTTGCCAGCCAGCAAACCATTGCTGTCAATGTGTATGACACAACTAATGCATCTGATCCTATTACGATGTATGGTACCGATGTTCTTGATACTGGTTTACTACACATAAGCGGTCTAGATTTTGGGGATCCGCTACGAAAACATGAGATGCACTGCAGGTTCAAGCATACGCCTCCATTTCCTTGGACAGCATTCTGGGCATCAGTGGGGGTATTTGTAATTACCTTTCTTTTGGGATATATATTTTATGCAGCAATAAATCGAATAGCTAAAGTGGAGGATGACTATTGTCAAATGAGAGAGCTGAAAGTTCGTGCTGAAGCTGCAGATGTCGCAAAATCTCAGTTTCTTGCGACAGTTTCACATGAGATCAGGACTCCAATGAATGGTGTTTTAGGTATGCTGCAAATGTTGATGGATACTGACCTTGATGACAATCAGATGGATTTTGCCCAAACTGCTCACACGAGTGGTAAAGATCTTATATCGGTTATAAGCGAGGTTCTCTATCAAGCTAAGATCGAGGCAGGCAAACTAGAACTTGAAGCTGTAGCTTTTCATCCACATGCAATTCTAGATGAAGTTCTATCACTTTTCTCTGAAAAGTCCGATGAAAAAGGAATTGAGTTGTCTGTTTATGCATCTAACCAAGTACCTGAAGTTGTCATCGGCGATCCTAAACGCTTCCGACAAATAATTACCAATCTTGTGGGAAATTCACTTAAGTTCATTCACAATAAAGGACATGTTTTTGTCTCGATTCATCTGGCAAATGAAGTGAAGAATCCACTTCACATCATGGATGCAGTGCTGAGAGAATGCTTAAACTTGAACCAGGACATGTCGGAAAGAACATGCAATACATTGAGTGGATTTCCTGTAGGAAACAGATGGAAAAGCTGGGAAAAGTTTCAAAAGTTAAATTTGGCGCATGAGTCAGAAACTATCCAACTACTAGTAACAGTTGAGGACACTGGTATAGGAATTCCTACCGATGCTCAAAGCCGCATATTTACACCTTTCATGCAGGCTGATAGTTCCACATCGCGAACATACGGTGGAACTGGAATAGGATTAAGCATTAGTAAATGTCTAGTTGACCTCATGGGAGGAGAAATTGGATTTGTAAGTGAGCCTGAAATTGGAAGTACTTTTTCATTTACTGGAAATTTTAGAAAAGGAGAAACAGAATCTGTGGATGAGAAGTGGCAGAAGAATAACCCTTTGGCCTCTGAGTTCCAGGGTTTGAGAGCATTAGTAATAGATAGAAGAAAAATCCGGGCTGAGGTTACACGATATCACCTGCAGAGGTTGGGCATGTCTGTAGATGTAAATTCCAGTCTTCAATCTGCTTGCTTTTCTCTTTCTGATACTTGCAACTCAAGTATGCTGACACAATTGGCCATGATTCTTATAGACAAGGATTCATGGGACAAGGAAAGTAGCATCTTATACGCAATCAAGAAACAAGGACAGAATGGCGTCAAAGGGGACTCGCTAAACTTTCCAAAGATTTTTCTCCTGGCCACCCACCTTAGCCCCAACGAGCGAAAGGAGCTAAAGTCAGTTGGTATCATAGATGATGTACTAATGAAGCCTCTTTGGCAAAGTGTTTTGATTCGCTACTACAGAGAATCCCTTGGAACTGGGAGAAAACAAATAGACAGAAAGAAAGTATCCCAACTTGAAAATTTATTGATACACAAACGAATTTTGGTGGTTGATGATAACGCAGTGAACAGAAAAGTTGCAGAAGGTGTTCTGCGAAAATATGGAGCAGTAGTTACCTGTGTGGATGGTGGTAAGGCTGCTCTTAAGGTGCTTAAACCACCACATAATTTTGATGCTTGCTTCATGGATCTCCAAATGCCAGAAATGGACGGTTTTGAGGTGACTAGGCGAATCCGGTATATGGAGAACGAGGTAAATGAAAAAATTGCTTGTGGGGAAGAATTGGCAGAGATGTTTGGTAACATTTCTTATTGGCACATACCAATACTAGCTATGACAGCTGATGTAACTCAAGCATCAAATGAAGAATGCAAAAAATGTGGGATGGATGACTTTGTGTCAAAGCCATTTGAAGAAGAGCAACTCTATACGGCAGTGGCATGTGTCTTCAGTTTTGGTTCATAG 3702 0.4052 MSFVKWVCEEKLVNFSRMSVIVNGRCSSPKIKSWKGNESLHVSNSSTTCRRKLFLLLFWVFGVAVVIGSVWFVFSTFNFKHLIKETACEKSAQTLLQRYNVSKKQLHVLASLFSGSDQILSNCIDERRLQMLLSSDIINTPQLMCPKNLDLQKEHRYVAESVEQCPILDDFVHMRLGLSFPWKAYVTLVSALLSDLVSVLLRGKVMRVCAVVDNVNLSSLIKGCCLVLIGIILSHKLSGFCLLRRNQKQKVVKEHPTAPQKRIQHCMLGHSKATGWRRKKLLVIFMSVGILGSAWLFRYMSSDIAQRREEMLATMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAVDQKIFGEYTESSAFERPLTSGVAYALKVLHSDRMHFEKQHGWTIKKMETENEALVQECIPENLDPAPIQDEYAPVVFAQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNYLGVVLTFAVYDSKLPPDATPEQRIEATVGYLGASYDVPSLVDKLLHQLASQQTIAVNVYDTTNASDPITMYGTDVLDTGLLHISGLDFGDPLRKHEMHCRFKHTPPFPWTAFWASVGVFVITFLLGYIFYAAINRIAKVEDDYCQMRELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDDNQMDFAQTAHTSGKDLISVISEVLYQAKIEAGKLELEAVAFHPHAILDEVLSLFSEKSDEKGIELSVYASNQVPEVVIGDPKRFRQIITNLVGNSLKFIHNKGHVFVSIHLANEVKNPLHIMDAVLRECLNLNQDMSERTCNTLSGFPVGNRWKSWEKFQKLNLAHESETIQLLVTVEDTGIGIPTDAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPEIGSTFSFTGNFRKGETESVDEKWQKNNPLASEFQGLRALVIDRRKIRAEVTRYHLQRLGMSVDVNSSLQSACFSLSDTCNSSMLTQLAMILIDKDSWDKESSILYAIKKQGQNGVKGDSLNFPKIFLLATHLSPNERKELKSVGIIDDVLMKPLWQSVLIRYYRESLGTGRKQIDRKKVSQLENLLIHKRILVVDDNAVNRKVAEGVLRKYGAVVTCVDGGKAALKVLKPPHNFDACFMDLQMPEMDGFEVTRRIRYMENEVNEKIACGEELAEMFGNISYWHIPILAMTADVTQASNEECKKCGMDDFVSKPFEEEQLYTAVACVFSFGS* 1234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3508 1233 Gene3D CHASE domain 353 579 IPR042240 -
Mtr5g3508 1233 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 621 700 IPR036097 GO:0000155|GO:0007165
Mtr5g3508 1233 PANTHER TWO-COMPONENT HISTIDINE KINASE 268 1230 - -
Mtr5g3508 1233 PANTHER HISTIDINE KINASE 2 268 1230 - -
Mtr5g3508 1233 Gene3D - 606 697 - -
Mtr5g3508 1233 CDD HATPase_EvgS-ArcB-TorS-like 751 910 - -
Mtr5g3508 1233 CDD REC_hyHK_CKI1_RcsC-like 1093 1225 - -
Mtr5g3508 1233 ProSiteProfiles Response regulatory domain profile. 1092 1229 IPR001789 GO:0000160
Mtr5g3508 1233 PRINTS Bacterial sensor protein C-terminal signature 840 854 IPR004358 GO:0016310|GO:0016772
Mtr5g3508 1233 PRINTS Bacterial sensor protein C-terminal signature 858 868 IPR004358 GO:0016310|GO:0016772
Mtr5g3508 1233 PRINTS Bacterial sensor protein C-terminal signature 875 893 IPR004358 GO:0016310|GO:0016772
Mtr5g3508 1233 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 689 910 IPR036890 -
Mtr5g3508 1233 SMART REC_2 1091 1225 IPR001789 GO:0000160
Mtr5g3508 1233 SMART HisKA_10 634 699 IPR003661 GO:0000155|GO:0007165
Mtr5g3508 1233 SMART HKATPase_4 746 915 IPR003594 -
Mtr5g3508 1233 ProSiteProfiles CHASE domain profile. 349 573 IPR006189 -
Mtr5g3508 1233 SMART CHASE_2 349 548 IPR006189 -
Mtr5g3508 1233 CDD HisKA 634 695 IPR003661 GO:0000155|GO:0007165
Mtr5g3508 1233 SUPERFAMILY CheY-like 1091 1227 IPR011006 -
Mtr5g3508 1233 ProSiteProfiles Histidine kinase domain profile. 641 915 IPR005467 -
Mtr5g3508 1233 Gene3D - 698 916 IPR036890 -
Mtr5g3508 1233 Pfam CHASE domain 352 546 IPR006189 -
Mtr5g3508 1233 Pfam His Kinase A (phospho-acceptor) domain 634 699 IPR003661 GO:0000155|GO:0007165
Mtr5g3508 1233 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 746 910 IPR003594 -
Mtr5g3508 1233 Gene3D - 300 352 - -
Mtr5g3508 1233 Pfam Response regulator receiver domain 1093 1225 IPR001789 GO:0000160
Mtr5g3508 1233 Gene3D - 1087 1230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3508 Mtr-Chr5 43856495 43863736 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3508 56 1229 Miscellaneous Gene Families AT5G35750 58.739 0.0 1323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr5g3508 CHASE 2.1e-33 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3508 K14489 - gmx:100805107 1801.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3508 5 43856495 43863736 Mtr5g3508 5 43856495 43863736 ECH