Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3500 ATGGCCACCTCTGCAATCCAACAATCAGCATTCACTGGAAAGACTGGTTTGAAACAAGGAAATGAGTTCATCAGGAAAGCTGGTAGCTTTGGCCAAAGTCGCTTCACCATGCGTCGTACTGTGAAGAGTGCTCCTGAAAGCATTTGGTATGGCCCAGACCGTCCCAAGTACTTGGGTCCATTCTCTGAACAAATTCCATCATACTTGACTGGTGAATTTCCTGGTGATTATGGATGGGACACAGCTGGATTATCAGCTGACCCTGAAACCTTTGCAAGGAACCGTGAGCTTGAAGTAATTCACAGCAGATGGGCCATGCTTGGTGCATTGGGATGTACCTTCCCTGAGATCCTTGAGAAGAACGGTGTTAAATTCGGTGAGGCTGTGTGGTTTAAGGCTGGTGCCCAGATCTTCTCTGAGGGTGGCCTTGACTATTTGGGCAACCCAAACCTGATCCATGCTCAGAGCATTCTTGCAATCTGGGCTACTCAGGTTGTGCTCATGGGATTTGTTGAAGGCTACAGAGTTGGTGGAGGACCACTTGGTGAAGGACTGGACCCACTTTACCCTGGTGGTGCCTTTGACCCTCTTGGTCTTGCTGATGACCCCGATGCATTCGCAGAGTTGAAGGTCAAGGAACTCAAGAACGGCCGATTGGCTATGTTCTCCATGTTTGGTTTCTTTGTTCAAGCCATTGTTACTGGCAAGGGCCCCGTTCAGAACCTTTACGACCATGTTGCTGACCCTGTTGCCAACAACGCATGGGCATACGCTACTAACTTCGTCCCCGGACAATGA 798 0.495 MATSAIQQSAFTGKTGLKQGNEFIRKAGSFGQSRFTMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVQNLYDHVADPVANNAWAYATNFVPGQ* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3500 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 265 IPR001344 GO:0009765|GO:0016020
Mtr5g3500 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Mtr5g3500 265 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 2.1, CHLOROPLASTIC-RELATED 1 265 - -
Mtr5g3500 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Mtr5g3500 265 Pfam Chlorophyll A-B binding protein 66 231 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3500 Mtr-Chr5 43794379 43795794 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3500 1 265 Chloroplast and Mitochondria Gene Families AT2G05070 86.038 2.58e-176 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3500 K08913 - gmx:100815789 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3500 5 43794379 43795794 Mtr5g3500 5 43794379 43795794 ECH