LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr5g3484	ATGTCTTCTTCTTCCTCCTCCTCTTCTTCTTCATCACAACCATCTTCACCTTCAATTACTCCTTATGATGTTCCTTCTTCCTCAAATGTTGTTACTGACATTCCTGGTCCTAGCACTTCTCATCAATCTGAAGAAGCTCCTTCATCTTCTTCCTCTCGCCAACGTGCTATGAATGAAGTATGGCTTGAACCTGTTGTTGAAGCATTGGCTACTCAAGTTGCCATTGATGCTTCTCATTATCATGGTCGTCTTGCTGCTGCTTCTGCTCTTGCCATTATTTTTCAGGTTTGTTCAACATGGAGGGAAGTGTCACGTTCGGATCTACTGTGGCAGAGGCTCACGAGACGCATCTGGCGCAGAACATATAGATTGAGGGACACGTGGCAGTTAGAGTACATCTACTGGCATCGAACGGCTAGGAACTTTACCACAGGTAGACATGCTTTAGTGGTCCCACAATATGATCCAGGAGATCACCACCAAAACCTCATCTGCCGCTGCCTCACTCTCTCCGACACCCACCTTGCCTGTGGCTTCGTCGACGGTAGTGTCCGACTCTTCGATCTCCACACCGGTGCACATGTTAGCACATTTTGGTCCAACCATGGTCTTCTATTTGGCCCGTTCTCACAATCCGTTTCAGGAATTGTAATTGGAAGCTCTACTCTCGCCTTCGCGAGATTAGATGGAGATGTCTACATTGCTATTATAAATGGGCCTGGACCAATACCCGGGCCCATTCCTGCACGACGGGCAATTATTGGTGATGTTGTTAATAACGGAGTATTAGTAGAATTTGCCGGCTCTAGTCGTTGGTGGGTTGGTTTATATGCTGGCCATGCAGGCGGGGCTTTTCAAATATGGGACGCGCACACGGAACAGCGCGTGTTCGTTGGCGGTTCATTAACCGATCCAGAAACAGTTCAAGGATGGCATATGTTAACCGAATTAGTTGAACCGGTCGGTCGAGTCCGAGTCACCGAAAGAGAATTTGTAGTAGCTTGCACAAGTACAAGATTAGTTTGTTTCAACTTAAGAAACCCAGAGGTTCTATTACGTGATGTAGTGTCCACGACAGGATTCATTGTTGGATCATTGGATGTTAGCCATGAGGTTTTTGTTGTGGTGGAAAGAAGTGGTGTTGGAACTGTTAGGCGCGTGAATAATTTCGAGCGCGTGAGTAGGTTTAGATTAAGGGCTTCATGGTTAAGAGGTTTATTAGTGTGCATGAATTTGGGGTATGTTATAACCTATTCTGGTGGGTCTGGTTTGTTGAGAGTGTGGGACATACATGAACCTGCGGCGCGATTGTGCATCACGCTCCCAGTTAGAGATGATGGAGAAGGACAGGTTAATGGTAATAGCATGGTTGCAAATCAAACTCACGTGGCTATATCATTTAATGATTCTTCTATACATTTATTGGATTTTAGTGTACAGTAA	1443	0.456	MSSSSSSSSSSSQPSSPSITPYDVPSSSNVVTDIPGPSTSHQSEEAPSSSSSRQRAMNEVWLEPVVEALATQVAIDASHYHGRLAAASALAIIFQVCSTWREVSRSDLLWQRLTRRIWRRTYRLRDTWQLEYIYWHRTARNFTTGRHALVVPQYDPGDHHQNLICRCLTLSDTHLACGFVDGSVRLFDLHTGAHVSTFWSNHGLLFGPFSQSVSGIVIGSSTLAFARLDGDVYIAIINGPGPIPGPIPARRAIIGDVVNNGVLVEFAGSSRWWVGLYAGHAGGAFQIWDAHTEQRVFVGGSLTDPETVQGWHMLTELVEPVGRVRVTEREFVVACTSTRLVCFNLRNPEVLLRDVVSTTGFIVGSLDVSHEVFVVVERSGVGTVRRVNNFERVSRFRLRASWLRGLLVCMNLGYVITYSGGSGLLRVWDIHEPAARLCITLPVRDDGEGQVNGNSMVANQTHVAISFNDSSIHLLDFSVQ*	481

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr5g3484	480	MobiDBLite	consensus disorder prediction	1	54	-	-
	Mtr5g3484	480	PANTHER	WD40 REPEAT PROTEIN 12, 37	1	479	-	-
	Mtr5g3484	480	PANTHER	TRANSCRIPTIONAL REGULATOR STERILE APETALA	1	479	-	-
	Mtr5g3484	480	SUPERFAMILY	WD40 repeat-like	157	477	IPR036322	GO:0005515
	Mtr5g3484	480	SUPERFAMILY	F-box domain	90	143	IPR036047	GO:0005515
	Mtr5g3484	480	Gene3D	-	138	257	IPR015943	GO:0005515
	Mtr5g3484	480	Gene3D	-	259	480	IPR015943	GO:0005515

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	SAP	Mtr5g3484		None	None	None

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr5g3484	-		-	gmx:100781108	603.979