Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3461 ATGAATACTAAGTCGGTTGAAGATTTGATGGAGACTTCAACTGAGGTTCATTTTTCTGGATTTCATATGGATAATGGATTAGAGCAAAGAAAAGCTGGCACCGAGGAACCAACCACTTCTGCATTTGATGAGTATAGACAACCTTTTGTCATAGGTGTTGCGGGTGGGTCGGCATCTGGAAAGACAGCAGTTTGTGATATGATTATCCAACAGCTTCATGATCAGAGGGTTGTACTTGTAAATCAGGATTCTTTTTACCATAACTTGACTAAGGAGCAACTCACAAGAGTACAAGATTACAACTTTGATCATCCTGAAGCTTTTGATAGTGAGCGATTGCTATCTGTCATGGACAAATTGAAGCATAGCCAAGCAGTAGATATTCCGAAGTATGACTTTAAGTGTTACAAGAATGATGTGTTTCCCGCAAGAAGGGTAAATCCTGCAGATGTTATAATTTTGGAAGGCATCCTTGTTTTTCATGATCCACGTGTCAGGGCATTGATGAATATGAAGATATTTGTTGACACAGATGCTGATGTTCGTCTGGCTAGAAGGATTAAGCGTGATACTGCCGATAACGCTCGTAATATTGAAGCAGTACTTGATCAGTATTCAAAATTTGTGAAGCCGGCTTTTGATGACTTTATCCTTCCTACAAAGAAGTATGCTGATATCATTATACCCCGTGGAGGAGATAATCATGTGGCTATTGATTTGATTGTGCAGCATATTCGCACAAAGCTTGGTCAACATGACCTCTGTAAAATATATCCCAACTTATATGTCATTCACTCTACTTTTCAGATACGGGGCATGCACACCCTGATACGCGATTCTCAGACAAAGAAGCACGACTTTGTATTTTATGCTGACCGTTTGATTCGTTTGGTCGTAGAACAAGGCCTAGGACATCTTCCATTTACAGAAAAGCAAGTTATCGCCCCTACTGGGTCTGTGTACAGCGGTGTAGATTTTTGTAAGAGGTTGTGTGGTGTCTCCGTTATCAGGAGTGGGGAAAGCATGGAGAATGCTTTACGAGCATGCTGCAAAGGTATCAAGATTGGTAAAATTCTTATTCATAGAGAAGGTGACAATGGTCAGCAGCTAATATATGAGAAGCTGCCAAATGATATCTCAGATAGGCATGTGTTACTGTTGGATCCTATCTTAGGCACAGGTAATTCTGCTGTTCAAGCAATTTCTTTAATTATAAGGAAGGGTGTACCAGAGTCCAACATTATATTTCTCAACCTCATATCAGCACCTCAGGGCCTGCATGTGGTCTGCAAAAGGTTTCCAAGGATAAAAATTGTGACATCTGAGATTGACAATGGTTTGAATGAAGATTTCCGCGTCGTTCCTGGGATGGGTGAGTTTGGGGATCGGTACTTTGGAACAGATGATGATGACGAGCTTGAGGAGAGTCGTTCACGGTAG 1440 0.4111 MNTKSVEDLMETSTEVHFSGFHMDNGLEQRKAGTEEPTTSAFDEYRQPFVIGVAGGSASGKTAVCDMIIQQLHDQRVVLVNQDSFYHNLTKEQLTRVQDYNFDHPEAFDSERLLSVMDKLKHSQAVDIPKYDFKCYKNDVFPARRVNPADVIILEGILVFHDPRVRALMNMKIFVDTDADVRLARRIKRDTADNARNIEAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIHSTFQIRGMHTLIRDSQTKKHDFVFYADRLIRLVVEQGLGHLPFTEKQVIAPTGSVYSGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLIIRKGVPESNIIFLNLISAPQGLHVVCKRFPRIKIVTSEIDNGLNEDFRVVPGMGEFGDRYFGTDDDDELEESRSR* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3461 479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 241 IPR027417 -
Mtr5g3461 479 Gene3D - 45 251 IPR027417 -
Mtr5g3461 479 SUPERFAMILY PRTase-like 251 468 IPR029057 -
Mtr5g3461 479 TIGRFAM udk: uridine kinase 47 248 IPR000764 -
Mtr5g3461 479 Gene3D - 252 467 IPR029057 -
Mtr5g3461 479 Pfam Uracil phosphoribosyltransferase 266 467 - -
Mtr5g3461 479 CDD UMPK 50 248 IPR000764 -
Mtr5g3461 479 PANTHER URIDINE KINASE 18 470 - -
Mtr5g3461 479 PANTHER URIDINE KINASE 18 470 - -
Mtr5g3461 479 PRINTS Uridine kinase signature 48 65 - -
Mtr5g3461 479 PRINTS Uridine kinase signature 78 89 - -
Mtr5g3461 479 PRINTS Uridine kinase signature 123 138 - -
Mtr5g3461 479 PRINTS Uridine kinase signature 180 190 - -
Mtr5g3461 479 PRINTS Uridine kinase signature 194 205 - -
Mtr5g3461 479 PRINTS Uridine kinase signature 216 229 - -
Mtr5g3461 479 CDD PRTases_typeI 325 440 IPR000836 -
Mtr5g3461 479 Pfam Phosphoribulokinase / Uridine kinase family 50 236 IPR006083 GO:0005524|GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3461 Mtr-Chr5 43463528 43471244 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3461 1 470 PRT Gene Family AT4G26510 83.087 0.0 811
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3461 K00876 - gmx:100798205 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3461 5 43463528 43471244 Mtr5g3461 5 43463528 43471244 ECH
Mtr3g1566 3 27465633 27472486 Mtr5g3461 5 43463528 43471244 PCT