Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3454 ATGGAGAAAGTAGACACTGAAATCATCCCTATGCCTTTCCCTCCTTACCGTCGATCTCACTTCCGCAGCCATACTTACACCACCCTTCTCCGTATTCTTTCCCACCTTTCTTCTTCCACCGTTCCTGATAATGGCAATGTTGGAATGGGGCAAGAAAACCAGGAAAAGGAGCCTGAGAACTCCGAGTTAAAAGTTGGTGCTGATGTCAAGGATCCCAAGGGTCCAATACCCTTGAAGGAAATACATGATGTTCATGAGACCATTGAAAGTGTTGGAGACAAGGGTAAGGATTTGAGTGCCAATGCTATGGTCCTAGATGATGCAGCAGCATTTCTTATGGGAGGAGATGAACAATCTACACAAACAGATGGTTTTCATTTGGAACAAACGATAATGGACGAGTTGGAGCTTGTTGTAAAAGGGGATGAAGATCCTGTTTGTGATGATAGTTTAATCCCCTTGAACTGCGAGAAACAGAATAGCGGTAGTGAAGTTGATTTGATGGATTACCGAGTAGAACATGTTGAACATCTGCGTTCTGGTACAAATACGTCTGAAAGTGTAAGTGAGGTGCAGTCGCAAGTACAAGGGGAGCTTAATCAACTTGACGTGGAAGGCTTTAATGTGTCCGAGTCAACAAAGGGACAAGCTTCCGATTCCGTAATTAGTAGTACATCAAGCATACAGATTGAAAGACAACAGAAGGAAACAGAATTGGTAACGCTGGTTTGTCCTCTAGCGGGATCTATTCCTACTATTCAAGAGGGTGAATTTGAGAAGGAAGAACAGTATGGTCATAAGGTTGATGAAGCAACTCATAGTTCTTTAGATCTTGATACAAATACTGAAGCATTGAATATGACAGAAGATGGTGGATTGCTAGACTCTACAATTTTGAAAGATAAATGTGAAACACAAAATGAAGAGAAATCAGAGAAGTTAATTTGTGTGAAAAATACAACAAATTCTTCCGATATTCTGATCGACGAAGGAGATCTAGAAGAGGGAGAAATTTCTGGAGAAATTTCAATGGATGGAAACACATTTGACGTGTCTTCTGCAGATGCTATAGTTTCAGAACAGATGAAATTGGATGAGATTGAGAAACCCGGGAGTTCATTTGAAAACATGACTTCTCCTTTCAATACGGGTATCTCCTTTCAAGGCTTTCCATCTAATCTCTTTACGGTAAATGCAATTCAAGATACACCAACATTAACCAAAAATCAAGTCTTGCGCAAAGGATTCATGGAAGAAACCTCTCACGGGAACTCGTCTGTAGTACAGCAGATTGTTGATGCCAGCAGAAATGAACAAAGTGGTCCTGATCCTAAGAAGAAGAAAAACAAAAAGCAGATGGTTGATGCCAGTGGGAGCAAACGTGGTCCTGGTTCTCAGGAGAAGAAAACTAGAAAGAGGAAGAAGTATCGAAAGAACAAAGCAGAAAAGAACAGAGAGCCAGGTGGTAAAAGGCCAAAGTTTATTCCAGAACAAAAACCAAAACCTAAACAATGTCGCCATTATATGAAAGGAAGATGCCATGAGGGGGACCAGTGCAATTTCTCACATGATGCTATTCCTTTAACAAAGTCCGTGCCATGTGCTCACTATGCCTGTGGCTCTTGTATGAAAGGGAATGATTGCCCATATGATCATCAGCTTTCCAAGTATCCTTGTTCCAATTTTGTGTCTAAAGGCTCCTGTTATAGAGGTCGTTGTATGTTTTCACACCAGGTGCAAACCAGCCAAGATATACCTACGCCTACAAATGCTTGCAAACCAGAGTTGAAGTCTCCTCTTTCGTCAGGAAATACAAATTTCAGTACACCACTGAATAATCATGGCACTGGTTCTGTCCAACAAACCAACTCCAATTCTAAGGGAATTTATTCTCACACCAATGTAGAACATAAGGTGACAGACGTTTCACAGACAAAGCCTACCTCAGCACCCAAAGGAATTAGATTTATAAATGTTGCTAACTTATCACCTACTACACCAAAACAAGACACGGTACAACCAAACAAGGGAAATCTTGTCCACGGTGGAACATGTGCAGATAAAGGTCAAAATACTGTGGAAATTTCTAAAAAAATTCCAGCTGTCATGCCCAAGGGAGTCAACTTTCTTTCTTTCGGCAAAGGTTCTGTTTGCAGTTTTAAACTTTCTATTCAATCCACTGCACAAGAAATGATATTGAAGTTGCCTCAGTCAGTCAATTTTGGTTTGTCTGAACATTCAGTTTCACTGCTGAATAAGGATGATCATGGAAAAGCTATTGACATAACTGCACAAAATTTACCACAAACTGCGCTATTCTCACATGAGATTTCAGACAAAAACCAATCCATGGCAGAACGAATGAAATCAAGGTTTCTGGAGAAAGATTCAACCGATGATTCTGTGAGGGATCACAGCCATTGTAAATCAGCTCAAGAGGTAAATAAGGCATCTGATAATTCTCAGGCTTCAACTGTGACCTCAGCTACGCTTCTTGCTAGTCCCTTTGTTTCACTTCAATCTTCAGAAGGCCTGGTATCTGGATGTCCTAAACAAGCATCAAACATAGGCCAAAGGGCACTCATTTCGACTTTAGCTTTTGCGGCGGAGCATGAATCAAATATTAAGATGAAATGCCCTACTGGTGCTTCACCTGTATGA 2661 0.4085 MEKVDTEIIPMPFPPYRRSHFRSHTYTTLLRILSHLSSSTVPDNGNVGMGQENQEKEPENSELKVGADVKDPKGPIPLKEIHDVHETIESVGDKGKDLSANAMVLDDAAAFLMGGDEQSTQTDGFHLEQTIMDELELVVKGDEDPVCDDSLIPLNCEKQNSGSEVDLMDYRVEHVEHLRSGTNTSESVSEVQSQVQGELNQLDVEGFNVSESTKGQASDSVISSTSSIQIERQQKETELVTLVCPLAGSIPTIQEGEFEKEEQYGHKVDEATHSSLDLDTNTEALNMTEDGGLLDSTILKDKCETQNEEKSEKLICVKNTTNSSDILIDEGDLEEGEISGEISMDGNTFDVSSADAIVSEQMKLDEIEKPGSSFENMTSPFNTGISFQGFPSNLFTVNAIQDTPTLTKNQVLRKGFMEETSHGNSSVVQQIVDASRNEQSGPDPKKKKNKKQMVDASGSKRGPGSQEKKTRKRKKYRKNKAEKNREPGGKRPKFIPEQKPKPKQCRHYMKGRCHEGDQCNFSHDAIPLTKSVPCAHYACGSCMKGNDCPYDHQLSKYPCSNFVSKGSCYRGRCMFSHQVQTSQDIPTPTNACKPELKSPLSSGNTNFSTPLNNHGTGSVQQTNSNSKGIYSHTNVEHKVTDVSQTKPTSAPKGIRFINVANLSPTTPKQDTVQPNKGNLVHGGTCADKGQNTVEISKKIPAVMPKGVNFLSFGKGSVCSFKLSIQSTAQEMILKLPQSVNFGLSEHSVSLLNKDDHGKAIDITAQNLPQTALFSHEISDKNQSMAERMKSRFLEKDSTDDSVRDHSHCKSAQEVNKASDNSQASTVTSATLLASPFVSLQSSEGLVSGCPKQASNIGQRALISTLAFAAEHESNIKMKCPTGASPV* 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3454 886 SUPERFAMILY CCCH zinc finger 500 524 IPR036855 GO:0046872
Mtr5g3454 886 SMART c3hfinal6 528 554 IPR000571 GO:0046872
Mtr5g3454 886 SMART c3hfinal6 556 579 IPR000571 GO:0046872
Mtr5g3454 886 SMART c3hfinal6 499 525 IPR000571 GO:0046872
Mtr5g3454 886 Pfam CCCH-type zinc finger 505 524 IPR041367 -
Mtr5g3454 886 Gene3D - 475 529 - -
Mtr5g3454 886 MobiDBLite consensus disorder prediction 466 480 - -
Mtr5g3454 886 MobiDBLite consensus disorder prediction 40 54 - -
Mtr5g3454 886 ProSiteProfiles Zinc finger C3H1-type profile. 528 555 IPR000571 GO:0046872
Mtr5g3454 886 MobiDBLite consensus disorder prediction 436 503 - -
Mtr5g3454 886 Gene3D - 530 591 - -
Mtr5g3454 886 MobiDBLite consensus disorder prediction 40 77 - -
Mtr5g3454 886 Coils Coil 466 486 - -
Mtr5g3454 886 MobiDBLite consensus disorder prediction 481 503 - -
Mtr5g3454 886 MobiDBLite consensus disorder prediction 439 455 - -
Mtr5g3454 886 ProSiteProfiles Zinc finger C3H1-type profile. 499 526 IPR000571 GO:0046872
Mtr5g3454 886 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 214 885 IPR045124 GO:0003723|GO:0045892
Mtr5g3454 886 PANTHER PROTEIN SUPPRESSOR OF SABLE 214 885 - -
Mtr5g3454 886 ProSiteProfiles Zinc finger C3H1-type profile. 558 580 IPR000571 GO:0046872
Mtr5g3454 886 MobiDBLite consensus disorder prediction 55 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3454 Mtr-Chr5 43386275 43395360 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr5g3454 zf-CCCH_4 2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3454 - - mtr:MTR_3g053340 1400.19