Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3426 ATGGCTTCTGATGGTCCAGATCATCCTAGAGAGTCAAGTTCAAAGGATGGAGTGCAACCAGCTAGTTCGAGGGTGCAAGAAGAATTTTCAAGAGCCTTTCCCATTGCGAATGTGCATAGATTGATGAAAAAAGCTCTACCAAGACATGCAAAGATAACCGATGAAAGCAAGGAAATTATGGTGAAATATGCAGCTGAATTTATTAGCTTTGTTACCGCTGAGGCTAACCATTATTGCAAGTTAGATTGTAGAACAACAATTACTGCTGAAGATTTGTTAGCTACTATGCAAAAATTGGGCTTTGATGACTATGCTCAATATTCCTTCCGCTACATCCAACTTTTTCGTCATGGTGCTCGTGTAGGTCAATATGCTCCCCCACCTCCACCTCCACCACCGCCGCCACAGGATTTTCAAGCTCATAATTTTCCATTGGATCCAAATTCCGTGCTTACCGACCCAACAGAAATGGGTGCAATTTTAGGAGATGATGATGATGAGGATAGAGAACTTGGTGGTGGTGGTGGTGATGGCAACTCAAGTGATGGAAGCTTTGATGTTATGGCTTTTCTTAATAATGATGACTAA 588 0.4201 MASDGPDHPRESSSKDGVQPASSRVQEEFSRAFPIANVHRLMKKALPRHAKITDESKEIMVKYAAEFISFVTAEANHYCKLDCRTTITAEDLLATMQKLGFDDYAQYSFRYIQLFRHGARVGQYAPPPPPPPPPPQDFQAHNFPLDPNSVLTDPTEMGAILGDDDDEDRELGGGGGDGNSSDGSFDVMAFLNNDD* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3426 195 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 139 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mtr5g3426 195 Gene3D Histone, subunit A 21 122 IPR009072 GO:0046982
Mtr5g3426 195 SUPERFAMILY Histone-fold 31 116 IPR009072 GO:0046982
Mtr5g3426 195 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 10 139 - -
Mtr5g3426 195 MobiDBLite consensus disorder prediction 123 140 - -
Mtr5g3426 195 MobiDBLite consensus disorder prediction 122 195 - -
Mtr5g3426 195 MobiDBLite consensus disorder prediction 1 23 - -
Mtr5g3426 195 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 94 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3426 Mtr-Chr5 43119504 43122639 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3426 13 116 CCAAT-HAP3 Transcription Factor Family AT5G47670 47.115 2.57e-26 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mtr5g3426 CBFD_NFYB_HMF 6.5e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3426 K08065 - mtr:MTR_5g095920 166.007