Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3412 ATGGCCAGCGATGATACAAATGAGCCCTTACTATTGAGATCACAGGACACTGTGGCTCAAAAGGCTAAAGGACGATTAAACCAAAGAAGGCTCCTCCGTTCTAGAAGTGCTCCTCACACAGATCATGCTCCTTTGGTGATAAACGACAAAGAATCGATTCCCCTTTCTGAAACCATATTTGGGAATCTACATCCAAGCTTTAAAAAAGTGGCTATTATCCTTATGGTCTATTTAGGTGTAGGAACTTTAATCTTCTACCTTGTCAGGAACCAAATCAAGGGAATGAAAACAGAAAGATTCCTTGATGCCTTATATTTTACAATTGTGACAATGACCACGGTTGGATATGGTGACCTTGTTCCCAATAGTGACCTTACAAAACTACTGGCTTGCGCTTTTGTTTTCTCTGGAATGGCGTTGATGGGACTAATCCTAAGCAAAGCAGCAGATTACTTGGTTGAGAAGCAAGAAGTTTTGTTAATTAAAGCCATGCACATGCGCCAAAAAGTTGGTCCAAGTGAAATTTTAAAGGAGCTTGAGATCAATAAAACAAGATACAAATTTTTTCTCGTCTTTTTGCTTCTTTTGATTCTCGTGATCGTGGGCACAATCTTCTTAGTCAATGTAGAGAAATTGGAAGTTATTGATGCCTTTTACTGTGTTTGTTCAACAATTACAACTCTTGGTTATGGAGATAAAAGTTTCTCTACTCAAGCTGGAAGAATATTTGCAGTGTTTTGGATACTAACAGGTACCATTTGTTTGGCTCAGTTTTTCCTCTACATGGCTGAACTAAACACCGAAAGCAGACAAAAGGCACTTGTCAATTGGGTTCTTACAAGGAAAATGACCAATTATGATTTGGAAGCTGCGGATCTTGATGAGGATGGAACTGTTGGGGCTGCTGAATTTGTTATTTATAAGCTCAAAGAGATGGGGAAGATTAGTCAAGAAGATATAACACTTGTGATGAAGGAGTTTGAAGAGCTTGACATTGATCAGTCTGGTACACTGTCTGTTTCTGATATTACACTTGCTCAATCGTCTTAA 1050 0.3876 MASDDTNEPLLLRSQDTVAQKAKGRLNQRRLLRSRSAPHTDHAPLVINDKESIPLSETIFGNLHPSFKKVAIILMVYLGVGTLIFYLVRNQIKGMKTERFLDALYFTIVTMTTVGYGDLVPNSDLTKLLACAFVFSGMALMGLILSKAADYLVEKQEVLLIKAMHMRQKVGPSEILKELEINKTRYKFFLVFLLLLILVIVGTIFLVNVEKLEVIDAFYCVCSTITTLGYGDKSFSTQAGRIFAVFWILTGTICLAQFFLYMAELNTESRQKALVNWVLTRKMTNYDLEAADLDEDGTVGAAEFVIYKLKEMGKISQEDITLVMKEFEELDIDQSGTLSVSDITLAQSS* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3412 349 SUPERFAMILY Voltage-gated potassium channels 68 167 - -
Mtr5g3412 349 Gene3D - 171 276 - -
Mtr5g3412 349 ProSitePatterns EF-hand calcium-binding domain. 331 343 IPR018247 -
Mtr5g3412 349 PRINTS Two pore domain K+ channel signature 223 251 IPR003280 GO:0005267|GO:0016020|GO:0071805
Mtr5g3412 349 PRINTS Two pore domain K+ channel signature 297 306 IPR003280 GO:0005267|GO:0016020|GO:0071805
Mtr5g3412 349 SUPERFAMILY EF-hand 251 344 IPR011992 -
Mtr5g3412 349 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 22 343 IPR003280 GO:0005267|GO:0016020|GO:0071805
Mtr5g3412 349 Pfam Ion channel 72 153 IPR013099 -
Mtr5g3412 349 Pfam Ion channel 194 265 IPR013099 -
Mtr5g3412 349 SUPERFAMILY Voltage-gated potassium channels 180 284 - -
Mtr5g3412 349 Gene3D - 64 158 - -
Mtr5g3412 349 PANTHER TWO PORE POTASSIUM CHANNEL A 22 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3412 Mtr-Chr5 43000014 43003570 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3412 47 349 Ion Channels AT5G55630 66.667 4.99e-153 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3412 K05389 - gmx:100777388 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3412 5 43000014 43003570 Mtr5g3412 5 43000014 43003570 ECH