Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3404 ATGATGTTGTCTTGCAGAGTTGTTGTTGTTTTGTTTGTTATGGTTTTTGTTGAGGTGGATTTAGCAGAATGTGTTAAAGGGGGTGTTAGGAATTACATTAGTTGGGAAGATTTGATTGTGAATGAACAAAGGTTGGTTGTGAAGAAAAGCAATAATGTTCAAAACAATGTGGTTAGAGTAATTGTGGTTGATCGAAATGGAAAGGGAGATTCTAAAACTGTTCAAGGTGCAGTTGATTTGGTTCCTAATGGAAACAAACAAAGAGTCAAAATCTACATTTTTCCAGGAACTTACAGAGAAAGAGTGTTTGTGCCAAAAACAAAGCCTTACATATCATTTATAGGTAGAAGAAATCTCACAGCAAGTCCTGTGATTACTTGGAACAGTAAATCATCAGACAGAGGTCCAAATGGTCAAGAATTGGGCACATATGGTTCAGCAACTGTAGCAGTTGAATCAAATTTTTTCTGTGCAACTGAGATTACTTTTGAGAATACAGTGGTTGCGTCACCAGGTGGACGAGGAATGCAAGCAGTGGCACTAAGGGTAGACAGTGATAGAGCAATGTTCTATAAAGTTAAGATTAAAGGAACACAAGACACTCTCTTGGACAACACAGGAACTCATTACTTCTACAAGTGTCTCATCCAAGGAAAAGTTGATTTCATCTTTGGCAATGCAAAATCACTCTATGAGAAGTGTAGGCTTCAATCAATAGCTGAGAACTATGGAGCAATTGCAGCACATCATAGGGATTCACCTCTTCAAGATACAGGTTTTTCTTTTGTAGGATGCAGTATTAGAGGAACAGGAAAAGTGTACCTTGGAAGAGCTTGGGGAGACTACTCAAGAGTAATTTACTCAAATTGTCATATGGATGATATTATTACTCCAGAAGGATGGTCATCATGGAATCATCCAGAAAGAAATAAGACTGCAGTGTTTGGTGAATTTAAGTGCCATGGAATAGGAGCAAATATAAAAAAGAGGGTGCCTTGGTCAAAACAATTCAGCTATGGAGAAGCAAAGCCTTTCTTGGACATTAACTTCATAAATGGTAATCAGTGGCTTAGACTGTAG 1080 0.3787 MMLSCRVVVVLFVMVFVEVDLAECVKGGVRNYISWEDLIVNEQRLVVKKSNNVQNNVVRVIVVDRNGKGDSKTVQGAVDLVPNGNKQRVKIYIFPGTYRERVFVPKTKPYISFIGRRNLTASPVITWNSKSSDRGPNGQELGTYGSATVAVESNFFCATEITFENTVVASPGGRGMQAVALRVDSDRAMFYKVKIKGTQDTLLDNTGTHYFYKCLIQGKVDFIFGNAKSLYEKCRLQSIAENYGAIAAHHRDSPLQDTGFSFVGCSIRGTGKVYLGRAWGDYSRVIYSNCHMDDIITPEGWSSWNHPERNKTAVFGEFKCHGIGANIKKRVPWSKQFSYGEAKPFLDINFINGNQWLRL* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3404 359 Pfam Pectinesterase 61 354 IPR000070 GO:0030599|GO:0042545
Mtr5g3404 359 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 10 359 - -
Mtr5g3404 359 SUPERFAMILY Pectin lyase-like 59 357 IPR011050 -
Mtr5g3404 359 Gene3D - 54 359 IPR012334 -
Mtr5g3404 359 PANTHER PECTINESTERASE QRT1 10 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3404 Mtr-Chr5 42928681 42931431 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3404 29 311 Carbohydrate Esterase AT5G55590 60.333 2.18e-133 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3404 K01051 - gmx:100804220 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3404 5 42928681 42931431 Mtr5g3404 5 42928681 42931431 ECH