Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3388 ATGGAAGACAAGGAAACGGTGAAGACGACGGTCCCATGCACACAACTCACAGATGTTGTCGTGTCCGGCGGGAAACAATATTCTTCTCCTAATGACTTGGAGACCTTCTATATCAAACTCACTCGACTTTTAGACTTCGTTGGAAAACGTTTCAATGTCCGAGAAACATCTCTAGACTTGTACCTCTTTTACTTGGAGGTCACAAGAAGAGGAGGTTATCACCAGGTTGGCCAAGAAAAGAAATGGAGTGAAGTTGTTTCTGCACTAAAACTGGAAGGAAACAATGCAACCTTATGTGCTCAAGTTGAAAATCTCTATGGTTATCTTCTTTACGAATTTGAGAAATTGTACTTCTACAGGTCTCCTGCAACTGGCACCACAACAGGTCCAGGCAAAAGGAAGCGGAACTCATGCCCTAGTTTATCTCAATTGACGGACGATGAAGATTATCCGATGGCGGCAAAGATATCCAAGGACTACTCTAGTCAAATTACAGAAGTGTTTCAACAAGCACCCTCAAGTAACAAAGAAAAGAAGAAACAGAAAGGTGCTCCAAGGAACCAAAGTGGTTACCAAATATTCCTCAAGAAGGAATGTGCTCGACTGAAAGCTGATCATCGGGACATTGGTGTCAGAAAACAAATGGCTATTGATGCTTGGAAGAAAATGTCAGACATTGATAAAAAGCCATATGTAGAGGAAAGCAAGAAAATAAAGGAAAAAAACAAAGAAGCAATGATCATTGACATTAAACAGAAGAGCACCCAAGATCTTAAGAGGGATGAAAAGAGGCCTAATGTGTGTGGTGACTACTAA 816 0.4105 MEDKETVKTTVPCTQLTDVVVSGGKQYSSPNDLETFYIKLTRLLDFVGKRFNVRETSLDLYLFYLEVTRRGGYHQVGQEKKWSEVVSALKLEGNNATLCAQVENLYGYLLYEFEKLYFYRSPATGTTTGPGKRKRNSCPSLSQLTDDEDYPMAAKISKDYSSQITEVFQQAPSSNKEKKKQKGAPRNQSGYQIFLKKECARLKADHRDIGVRKQMAIDAWKKMSDIDKKPYVEESKKIKEKNKEAMIIDIKQKSTQDLKRDEKRPNVCGDY* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3388 271 MobiDBLite consensus disorder prediction 125 144 - -
Mtr5g3388 271 SUPERFAMILY HMG-box 173 246 IPR036910 -
Mtr5g3388 271 Gene3D High mobility group box domain 172 247 IPR036910 -
Mtr5g3388 271 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 1 266 - -
Mtr5g3388 271 SMART bright_3 31 119 IPR001606 GO:0003677
Mtr5g3388 271 Gene3D - 20 133 IPR036431 GO:0003677
Mtr5g3388 271 MobiDBLite consensus disorder prediction 125 145 - -
Mtr5g3388 271 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 1 266 - -
Mtr5g3388 271 Pfam ARID/BRIGHT DNA binding domain 51 114 IPR001606 GO:0003677
Mtr5g3388 271 SMART hmgende2 183 251 IPR009071 -
Mtr5g3388 271 Pfam HMG (high mobility group) box 185 246 IPR009071 -
Mtr5g3388 271 ProSiteProfiles ARID domain profile. 23 118 IPR001606 GO:0003677
Mtr5g3388 271 CDD HMG-box 185 246 - -
Mtr5g3388 271 SUPERFAMILY ARID-like 28 121 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3388 Mtr-Chr5 42739461 42742502 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3388 57 237 ARID Transcription Factor Family AT1G55650 22.596 6.79e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mtr5g3388 ARID 3.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3388 - - mtr:MTR_5g095070 512.301