Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3373 ATGATGTTTGTTTTGTCTTCTGTTTCATTCATGAACCTTGGAACTGATTTTGTTCTTAAACCCATTTTCCTTCATGGGATATCTAGCTTAATTCATATACTATTGATTATTGCAATTTTAGTTTCATCGGTTTGGAGAAAATTTACAGTTGTGAATGAGTCTAAGGAGAAACCTAATAACACTTTGTTTAAAGTGACAAAGTTTTCTTCTTTTGGTTTTTCTTCTTTCAATTTTGTTCTGTTTCTCTTGAACTACTTTTATTGGTATACTAGTGGTTGGTCAGAAGAAAAGGTTGTTACTCTTTTTGATTTAGCTTTAAAAACAGTTGCTTGGTGTGTTGTTTGTGTTTGTTTCTACAAAGGGTTTTTGTTTTTCTTCAGTTCAGGTCAAAGAAAAAGAAGGTTTCCATTCTTTTTTAGAGCTTGGTGTGTTTTCTTTTTATTTGTTTCATGTTATTGTTTTGTGGTTGATATTGTTGTTCTTTATGAAAATCACATCGAGTTAACAGTTCAATGCTTGGTTTCTGATGTGGGGTCATTTTGTGTTGGTTTGTTTTTTTGTTATGTGGGGTATTGTGTGAAAAATGAGAGTGAAGAAAGTGATAGCACTTTTCAAGAGCCTCTTTTGAATGGTGATACACATATTGGTAATGGTAATGTTAATCCCTTGGAGCTAAAAGAGACTAAAGGGAGTGACACTGTTACCCCTTTTTCTACTGCTGGAATTTTGAGTCTTCTCACTTTCACTTGGGTGGGACCACTTATAGCATTTGGTTATAAGAAAAACTTAGACCTTGAGGATGTTCCTCAGCTAGATAGTGGAGATAGTGTGGTAGGAGCTTTTCCAATTTTTAGAGAAAAACTTGAAGCTGATTGTGGTGCAGTCAATAGAGTAACCACACTTAAGTTAGTTAAGTCATTGATAATCTCAGGGTGGAAAGAGATTCTTTTTACTGCTTTTCTTGCATTATTAAACACTTTTGCTTCTTATGTTGGTCCTTATCTTATTGACTCTTTTGTTCAATACCTTGATGGAAAAAGGCTATACGAGAATCAAGGCTATGTGTTGGTTTCTGCATTTTTCTTTGCAAAGCTTGTAGAGTGCTTAACACAGAGGCATTGGTTCTTTAGGTTGCAGCAACTCGGACTTCGAACCCGAGCACTGCTTGTGACTATGATATATAGTAAAGCCTTAACACTTTCAGGTCAATCAAGACAGTGCCATACTTCTGGAGAAATAATCAATTTCATGACTGTTGATGCCGAAAGAGTTGGTAGTTTCAGTTGGTACATGCATGATTTGTGGTTAGTAGCTTTGCAAGTTACACTGGCATTGTTAATTTTGTATAAAAATCTTGGACTTGCTTCAATTGCTGCTTTTGTTGCAACTATTATTGTTATGTTAGCAAATGTTCCATTGGGATCATTGCAAGAGAAGTTTCAAAATAAGTTGATGGAGTCAAAGGATACAAGAATGAAGACCACATCTGAAATTTTAAGGAACATGAGGATCCTTAAACTGCAAGGATGGGAAATGAAGTTTCTATCTAAAATAACTGCGCTCAGGGACGCTGAACAAGGCTGGTTGAAAAAATTTCTTTATACTAACGCCGTGACTACATTTGTCTTTTGGGGTGCACCTACATTTGTATCTGTGGTTACTTTTGGTACTTGTATGCTCATAGGGATCCCACTTGAATCAGGGAAGATTCTGTCAGCACTTGCGACATTCAGGATTCTTCAAGAGCCTATTTATAATCTTCCAGATGTAATTTCAATGATAGCACAAACTAAAGTTTCTCTTGATAGGATAGCGTCGTTCCTTCGTCTTGATGACTTGCAATCCGATGTTGTCGAAAAGCTTCCTCCTGGTAGTTCTGACACAGCAATTGAAGTGGTTGATGGGAATTTTTCTTGGGAGTTATCTTTGCCTAGTCCAACTTTGCAGAACATAAATCTCAAAGTTTCTCATGGCATGAAGGTTGCTGTTTGTGGTACTGTTGGATCAGGAAAGTCTACTTTACTTTCTTGTGTATTGGGAGAAGTACCGAAGATATCAGGCGTCCTTAAGGTTTGTGGAACAAAGGCCTATGTCGCTCAATCACCATGGATTCAAAGTGGCAAGATAGAGGATAATATATTGTTTGGTGAAAACATGGTTAGGGAAAGGTATGAAAAGGTACTTGAAGCATGTTCCTTGAAGAAGGATTTGGAAATCTTGTCATTTGGTGATCAGACAGTTATAGGCGAGCGTGGAATAAATTTGAGTGGTGGACAGAAACAAAGAATACAAATAGCTCGTGCTCTTTACCAAGATGCTGATATCTATCTATTTGACGATCCTTTTAGTGCTGTTGATGCTCATACAGGATCTCACCTTTTTAAGGAATGCTTGCTCGGTGTTTTAAGCTCAAAAACAGTTGTTTATGTTACTCATCAAGTGGAGTTCTTACCTACTGCTGACCTTATATTGGTCATGAAAGACGGGAAAGTTACTCAAAGTGGAAAGTATGCCGATCTGCTTAACATTGGGACTGACTTTATGGAACTTGTTGGTGCACACAGAGAGGCTTTGTCTACACTTGAATCATTGGATGGAGGAAAAGCATGTAATGAAATAAGTACATCAGAACAAGAAGTAAAAGAGGCAAACAAAGATGAGCAAAATGGTAAAGCAGATGATAAAGGCGAACCGCAAGGCCAACTCGTTCAAGAAGAAGAAAGGGAGAAAGGTAAAGTTGGATTTTCAGTCTATTGGAAGTATATCACAACTGCATATGGAGGATCTCTTGTACCGTTCATATTATTCGCTCAGATTCTTTTTCAAGCTCTTCAAATTGGAAGCAACTATTGGATGGCTTGGGCAACTCCCATCTCAGCCGAAGTCGAGCCACCTGTTGAAGGAACAACTCTTATTGAAGTCTATGTTGGTTTTGCCATTGGAAGTTCTTTATGCATTCTTGTTAGAGCATTGTTACTTGTTACAGTTGGTTATAAGACAGCTACTATACTCTTCAATAAAATGCACTTGTGCATTTTCCGTGCCCCGATGTCGTTTTTTGATTCTACTCCAAGTGGTCGAATCCTTAATAGAGCTTCTACTGACCAAAGTGCAGTGGATACCGACATTCCTTATCAAATTGGTTCATTTGCCTTCTCCATAATCCAGCTTCTCGGAATTATAGCAGTGATGTCTCAGGTTGCATGGCAAGTTTTCATTGTCTTTATACCCGTGATAGCAGTTAGCATTTGGTATCAGCGATATTATTTACCATCAGCCCGTGAACTATCACGTTTAGGTGGAGTATGCAAAGCCCCAATCATTCAACACTTTGCAGAAACAATTTCCGGTACTTCAACCATTAGAAGCTTTGATCAACAGTCTAGATTTCATGAAACAAACATGAAACTGACTGATGGGTATTCTCGGCCAAAGTTCAATATTGCTGCTGCTATGGAATGGTTATGCTTCCGCTTAGATATGTTGTCTTCCATCACGTTTGCCTTTTCCTTGATATTCTTGATATCGATTCCACCTGGAATCATAAATCCAGGCCTTGCTGGTCTAGCTGTTACCTATGGTCTAAATTTAAACATGATACAAGCTTGGGTGATATGGAATCTTTGCAACTTGGAGAACAAAATTATATCGGTTGAAAGGATACTTCAGTATACAACCATTCCTAGTGAGCCTCCCCTTGTTTTAGAAGAAGAAAATAGGCCAGATTCTTCTTGGCCCGCATACGGCGAGGTTGATATACAGAACTTGCAGGTTCGATATGCTCCACATCTTCCGCTTGTGTTGCGTGGCCTGACTTGCACATTTAATGGAGGATTGAAAACTGGCATTGTTGGTAGAACAGGTAGTGGAAAATCAACTCTTATACAAACACTTTTCCGACTCGTTGAACCTACTGCCGGGGAAGTTATCATCGACAGAATCAACATATCCACAATTGGACTGCACGATTTGAGGTCTAGACTAAGCATTATTCCGCAGGATCCAACCATGTTTGAGGGGACTGTGAGAAGTAATCTGGACCCGCTGGAAGAGTACACTGATGAACAAATATGGGAGGCTTTGGATAAGTGTCAACTGGGAGATGAAGTTCGAAAGAAAGAAGGAAAGCTTGACTCTTCAGTTAGTGAGAATGGTGAGAATTGGAGCATGGGTCAAAGGCAATTGGTTTGCTTAGGTAGGGTTCTTCTTAAGAAGAGCAAGATTTTGGTGCTTGACGAAGCAACTGCATCAGTTGATACAGCTACAGATAATTTGATTCAGCAAACTCTTAGGCAGCATTTCACGGACTCTACTGTCATTACCATTGCACATCGAATAACTTCTGTTCTTGACAGTGATATGGTTCTACTTCTTGATCAAGGACTTATTGAGGAGTATGACTCCCCAACGACATTGTTAGAGGATAAGTCATCATCTTTTGCCAAGCTTGTTGCAGAGTATACCATGAGGTCCAACTCAAATTTTTGA 4488 0.387 MMFVLSSVSFMNLGTDFVLKPIFLHGISSLIHILLIIAILVSSVWRKFTVVNESKEKPNNTLFKVTKFSSFGFSSFNFVLFLLNYFYWYTSGWSEEKVVTLFDLALKTVAWCVVCVCFYKGFLFFFSSGQRKRRFPFFFRAWCVFFLFVSCYCFVVDIVVLYENHIELTVQCLVSDVGSFCVGLFFCYVGYCVKNESEESDSTFQEPLLNGDTHIGNGNVNPLELKETKGSDTVTPFSTAGILSLLTFTWVGPLIAFGYKKNLDLEDVPQLDSGDSVVGAFPIFREKLEADCGAVNRVTTLKLVKSLIISGWKEILFTAFLALLNTFASYVGPYLIDSFVQYLDGKRLYENQGYVLVSAFFFAKLVECLTQRHWFFRLQQLGLRTRALLVTMIYSKALTLSGQSRQCHTSGEIINFMTVDAERVGSFSWYMHDLWLVALQVTLALLILYKNLGLASIAAFVATIIVMLANVPLGSLQEKFQNKLMESKDTRMKTTSEILRNMRILKLQGWEMKFLSKITALRDAEQGWLKKFLYTNAVTTFVFWGAPTFVSVVTFGTCMLIGIPLESGKILSALATFRILQEPIYNLPDVISMIAQTKVSLDRIASFLRLDDLQSDVVEKLPPGSSDTAIEVVDGNFSWELSLPSPTLQNINLKVSHGMKVAVCGTVGSGKSTLLSCVLGEVPKISGVLKVCGTKAYVAQSPWIQSGKIEDNILFGENMVRERYEKVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGVLSSKTVVYVTHQVEFLPTADLILVMKDGKVTQSGKYADLLNIGTDFMELVGAHREALSTLESLDGGKACNEISTSEQEVKEANKDEQNGKADDKGEPQGQLVQEEEREKGKVGFSVYWKYITTAYGGSLVPFILFAQILFQALQIGSNYWMAWATPISAEVEPPVEGTTLIEVYVGFAIGSSLCILVRALLLVTVGYKTATILFNKMHLCIFRAPMSFFDSTPSGRILNRASTDQSAVDTDIPYQIGSFAFSIIQLLGIIAVMSQVAWQVFIVFIPVIAVSIWYQRYYLPSARELSRLGGVCKAPIIQHFAETISGTSTIRSFDQQSRFHETNMKLTDGYSRPKFNIAAAMEWLCFRLDMLSSITFAFSLIFLISIPPGIINPGLAGLAVTYGLNLNMIQAWVIWNLCNLENKIISVERILQYTTIPSEPPLVLEEENRPDSSWPAYGEVDIQNLQVRYAPHLPLVLRGLTCTFNGGLKTGIVGRTGSGKSTLIQTLFRLVEPTAGEVIIDRINISTIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSSVSENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNLIQQTLRQHFTDSTVITIAHRITSVLDSDMVLLLDQGLIEEYDSPTTLLEDKSSSFAKLVAEYTMRSNSNF* 1496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3373 1495 CDD ABC_6TM_ABCC_D1 317 604 IPR044746 GO:0140359
Mtr5g3373 1495 Gene3D ABC transporter type 1, transmembrane domain 294 612 IPR036640 GO:0005524|GO:0016021
Mtr5g3373 1495 Gene3D ABC transporter type 1, transmembrane domain 894 1231 IPR036640 GO:0005524|GO:0016021
Mtr5g3373 1495 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 107 1495 - -
Mtr5g3373 1495 CDD ABCC_MRP_domain1 630 830 - -
Mtr5g3373 1495 SMART AAA_5 657 830 IPR003593 -
Mtr5g3373 1495 SMART AAA_5 1277 1462 IPR003593 -
Mtr5g3373 1495 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1251 1485 IPR003439 GO:0005524
Mtr5g3373 1495 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 933 1213 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr5g3373 1495 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 630 853 IPR003439 GO:0005524
Mtr5g3373 1495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 627 852 IPR027417 -
Mtr5g3373 1495 CDD ABCC_MRP_domain2 1249 1469 - -
Mtr5g3373 1495 Pfam ABC transporter 1269 1416 IPR003439 GO:0005524
Mtr5g3373 1495 Pfam ABC transporter 648 782 IPR003439 GO:0005524
Mtr5g3373 1495 Gene3D - 1233 1487 IPR027417 -
Mtr5g3373 1495 Gene3D - 613 865 IPR027417 -
Mtr5g3373 1495 Pfam ABC transporter transmembrane region 316 583 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr5g3373 1495 Pfam ABC transporter transmembrane region 933 1174 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr5g3373 1495 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 107 1495 - -
Mtr5g3373 1495 SUPERFAMILY ABC transporter transmembrane region 307 609 IPR036640 GO:0005524|GO:0016021
Mtr5g3373 1495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1243 1480 IPR027417 -
Mtr5g3373 1495 CDD ABC_6TM_ABCC_D2 931 1225 IPR044726 GO:0140359
Mtr5g3373 1495 SUPERFAMILY ABC transporter transmembrane region 931 1231 IPR036640 GO:0005524|GO:0016021
Mtr5g3373 1495 ProSitePatterns ABC transporters family signature. 755 769 IPR017871 GO:0005524
Mtr5g3373 1495 MobiDBLite consensus disorder prediction 878 907 - -
Mtr5g3373 1495 MobiDBLite consensus disorder prediction 875 907 - -
Mtr5g3373 1495 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 316 596 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3373 Mtr-Chr5 42636008 42642553 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3373 630 860 Calmodulin-binding Proteins AT2G36910 29.482 2.07e-21 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3373 - K05666 gmx:100811245 2436.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3373 5 42636008 42642553 Mtr3g1445 3 25883945 25891042 PCT