Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3356 ATGGAAAAAGTTCACAAAGAGATTTATATGATATTGCAAGACATCATCGACGATCACAAAAGCATTCGCAAGGAAGATAGCAATGATGAAGATCTAGTAGATGTTCTTCTCAAGATTAAACAGGAAAATTATCACTCAGAACATCCTTTAACGGATGACAATATGAAATCAATCATCCAGGACATGTTCACTGCTGGTACCGAAACATCGTCAGAGATGGTAAAGAACCCAAAGTTTGTCATCAAAGAAACACTGAGGTTGCATCCAGTTGCACCATTGTTAGTTCCAAGAGAAAGTAGGGAGAGATGCCAAATTAATAGGCATGAGATCCCAATTAAGACAAGAGTCGTTATTATTGCTTGGGCTATTGGAAGAGATCCAAGGTATTGGGTTGAAGCTGAGAGATTTAAACCTGAGAGGTTTGTTAATAGCACAATTGAATTCAAAGGCACGGACTTTGAATACATACCATTTGGTGCTGGAAGGAGGATGTGTCCCGGAATTGCATTTGCCCTACCAAACATTGAGCTACCTCTTGCTCAATTACTTTACCGGTTTGATTGGAAGCTTCCCAATAAAATGAAGAATGAAGAACTAGATATGGCTGAGTCATTTGGGATTACTGTAGGTAGAAAACACGACCTATATTTAATTGCTATTAATCGTCTCTGTAATATGTATTATCTAAGCAAACAAGTTCAGAAACGATGTTCCTAA 717 0.3794 MEKVHKEIYMILQDIIDDHKSIRKEDSNDEDLVDVLLKIKQENYHSEHPLTDDNMKSIIQDMFTAGTETSSEMVKNPKFVIKETLRLHPVAPLLVPRESRERCQINRHEIPIKTRVVIIAWAIGRDPRYWVEAERFKPERFVNSTIEFKGTDFEYIPFGAGRRMCPGIAFALPNIELPLAQLLYRFDWKLPNKMKNEELDMAESFGITVGRKHDLYLIAINRLCNMYYLSKQVQKRCS* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3356 238 Gene3D Cytochrome P450 78 217 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr5g3356 238 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 158 167 IPR017972 GO:0005506|GO:0016705
Mtr5g3356 238 PRINTS E-class P450 group I signature 54 71 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr5g3356 238 PRINTS E-class P450 group I signature 119 143 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr5g3356 238 PRINTS E-class P450 group I signature 155 165 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr5g3356 238 PRINTS E-class P450 group I signature 165 188 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr5g3356 238 PANTHER CYTOCHROME P450 71B11-RELATED 1 75 - -
Mtr5g3356 238 PANTHER CYTOCHROME P450 71B11-RELATED 78 222 - -
Mtr5g3356 238 Pfam Cytochrome P450 80 203 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr5g3356 238 Pfam Cytochrome P450 2 72 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr5g3356 238 PANTHER CYTOCHROME P450 71D10 1 75 - -
Mtr5g3356 238 PANTHER CYTOCHROME P450 71D10 78 222 - -
Mtr5g3356 238 Gene3D Cytochrome P450 1 76 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr5g3356 238 SUPERFAMILY Cytochrome P450 2 222 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr5g3356 238 PRINTS P450 superfamily signature 79 90 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr5g3356 238 PRINTS P450 superfamily signature 156 165 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr5g3356 238 PRINTS P450 superfamily signature 165 176 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3356 Mtr-Chr5 42499015 42500004 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3356 1 220 Cytochrome P450 AT3G26230 40.152 1.52e-59 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3356 - K23806 mtr:MTR_5g094510 476.478