Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3354 ATGCAAACATCTCTTAATCACAAAATGTCATATGATTCTAGCATGTTCAACATCGAGCCTATACGAAATCTAGACTCATACTGCTTCCTGCAAAATGAGAATCTCGAAAACTACTCATCTTCTGATAACGGTAGCCATTCAACCTACCCTTCATTTCAAGCTTTAGAACAAAACCTTGAATCTTCTAACAATAGTCCGGTCTCAAAGCTACAGTCAAAATCTTACACATTCACGTCGCAAAACTCTCTTGAAATCATCAATGATTCTTTAGAGAATGAATCTTGCTTGACACATAACCAAGATGACTTGTGGCACAAGATAAGAGAGCTTGAAAATGCTATGCTAGGACAAGATGCTGCAGATATGCTAGACATATATAATGATACTGTAATAATTCAACAAGAATCTGATCCACTTTTGTTAGAGGCAGAGAAGTGGAACAAAATGATTGAGATGATATCTAGAGGGGATTTGAAAGAAATTCTGTTTACATGTGCAAAAGCAATATCAGAAAATGATATGGAAACAGCTGAATGGTTAATGTCAGAGTTGTCGAAAATGGTTTCAGTTTCGGGAAATCCAATCCAAAGGTTAGGAGCATACATGTTGGAAGCTCTTGTTGCAAGAATAGCTTCTTCAGGAAGCATAATATACAAATCCTTGAAATGCAAAGAGCCTATAACTGCTACTAGTAAAGAACTACTCTCACACATGCATGTGCTTTATGAAATTTGTCCTTACCTCAAATTTGGATACATGTCAGCAAATGGTGTAATTGCTGAAGCCTTGAAAGATGAAAGTGAAATTCATATAATTGATTTTCAGATTAATCAGGGAATTCAGTGGATGAGTCTAATCCAAGCACTTGCCGGAAAACCCGGAGGACCGCCGAAGATCAGAATAACCGGTTTTGATGACTCAACGTCCGCTTATGCTAGGGGAGGAGGACTTGGTATTGTTGGAGAAAGGTTATCAAAACTTGCAGAGTCATATAATGTAGCATTTGAGTTTCATGCTATAGGGGTTAGTCCTTCTGAGGTGAGACTTGAAGACCTTGAACTTCGTCGTGGAGAAGCTATTGCGGTGAATTTTGCCATGATGCTGCATCATGTACCGGATGAAGATGTACATGGTGGTAAGAATCATCGTGATAGATTGGTGAGATTGGCAAAATGTTTGTCTCCTAAGGTAGTGACTCTTGTTGAGCAAGAATCAAATACCAACGAACTTCCATTCTTTGCACGTTTCGTCGAGACAATGAACTACTACTTCGCAGTTTTTGAATCAATTGATGTTGCTTTGCCACGGGAGCACAGAGAAAGGATTAATGTGGAACAGCATTGCTTGGCTCGTGAAGTGGTCAATTTAGTAGCGTGTGAAGGCGCAGAAAGAGTTGAACGTCACGAGGTTCTGAAGAAGTGGAGATCATGTTTCACAATGGCTGGATTCACACCATATCCATTAAGCTCTTATATTAATTATTCAATACAAAATCTTCTAGAAAATTACCAAGGACATTATACTCTACAAGAGAAAGATGGTGCTCTTTATCTTGGTTGGATGAATCAACCTCTTATTACCTCTAGTGCTTGGAGGTGA 1599 0.3877 MQTSLNHKMSYDSSMFNIEPIRNLDSYCFLQNENLENYSSSDNGSHSTYPSFQALEQNLESSNNSPVSKLQSKSYTFTSQNSLEIINDSLENESCLTHNQDDLWHKIRELENAMLGQDAADMLDIYNDTVIIQQESDPLLLEAEKWNKMIEMISRGDLKEILFTCAKAISENDMETAEWLMSELSKMVSVSGNPIQRLGAYMLEALVARIASSGSIIYKSLKCKEPITATSKELLSHMHVLYEICPYLKFGYMSANGVIAEALKDESEIHIIDFQINQGIQWMSLIQALAGKPGGPPKIRITGFDDSTSAYARGGGLGIVGERLSKLAESYNVAFEFHAIGVSPSEVRLEDLELRRGEAIAVNFAMMLHHVPDEDVHGGKNHRDRLVRLAKCLSPKVVTLVEQESNTNELPFFARFVETMNYYFAVFESIDVALPREHRERINVEQHCLAREVVNLVACEGAERVERHEVLKKWRSCFTMAGFTPYPLSSYINYSIQNLLENYQGHYTLQEKDGALYLGWMNQPLITSSAWR* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3354 532 Pfam GRAS domain family 159 532 IPR005202 -
Mtr5g3354 532 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 17 531 IPR005202 -
Mtr5g3354 532 ProSiteProfiles GRAS family profile. 149 532 IPR005202 -
Mtr5g3354 532 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 17 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3354 Mtr-Chr5 42465874 42469066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3354 1 532 GRAS Transcription Factor Family AT1G50600 55.064 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Mtr5g3354 GRAS 4.1e-131 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3354 - - cam:101502619 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3354 5 42465874 42469066 Mtr5g3354 5 42465874 42469066 ECH
Mtr3g1422 3 25511173 25514414 Mtr5g3354 5 42465874 42469066 PCT