LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr5g3352	ATGGAAGTAACCACCACTAACTCCGGCGAAGGAACACCCACTGATCCGAATCGAAATGGGTCGGTTCAAAATTCGATGGCAAGATACAAGTTGATGTCGCCGGCGAAGCTTCCGATCTCAAGGTCGCCGTGCATCACAATACCTGCCGGGTATAGTCCTACGTCGTTGTTGGAGTCTCCGGTTCTTCTTTCAAACATGAAGGTTGAGCCTTCACCGACTACAGGGTCCCTTCTTCAAGCTTTAAACTGTTCTATGGCTTCTGCTACATTTCCTGTAACTTCTGCATGCTTCAATACCAGCACTGTTAATGGCAGAAAATCAAGTTTCTTTGAGTTTAAACCACAAGATAGAAATATGGTTCCTGCAGACTTCAACAACCATGTAAGCGAAAAATCTACTCAAATGGAAGGTTCAGGAAACGGTCAATCATTTCGATCCTCTCCATTAAATGAAAATGAGATAGAAGATCAATCTAATGAATTAAGCCTATCATCATCACCTGTGCATATGGTTAGTTCCGGCGCTAGCGCTCCCGTCAATGTCAATTCGGATGAACCTAACCACAAAGGCAGCACTGCTAATGGGCCTCAATCATCAAATGATGGATACAATTGGCGAAAGTATGGGCAAAAACATGTTAAAGGGAGTGAGTTTCCGCGCAGCTATTACAAATGTACGCATCCTAACTGTGAAGTGAAAAAACTTTTTGAACGCTCTCATGATGGTCAAATCACTGAGATAATATATAAGGGAACACATGATCATCCTAAACCTCAGCCAAGCAACCGATACTCTGCTGGTTCTGTTATGTCTACACAAGGAGAGAGATCCGATAATAGGGCATCTTCTTTGGCTGTCCGAGATGACAAAGCATCCAATAGTCCAGAGCAATCAGTTGTGGCAACAAATGATCTTAGTCCAGAGGGTGCTGGATTTGTGTCGACCAGGACAAACGATGGGGTTGATGATGATGATCCCTTCTCAAAGCAAAGAAAAATGGAACTCGGAAATGCTGACATCATTCCTGTAGTTAAGCCTATCCGAGAGCCACGGGTTGTGGTACAGACTATGAGCGAAATTGATATATTGGATGATGGATACCGCTGGCGTAAATATGGGCAGAAGGTTGTGAGGGGAAATCCTAACCCAAGGAGTTATTACAAATGTACAAATGCTGGTTGCCCTGTTAGGAAACACGTGGAAAGAGCATCACATGATCCGAAAGCTGTAATCACAACATATGAAGGCAAACACAATCATGATGTACCTGCCGCAAGGAGTAGTAGCCATGACATGGCAGGACATGCAACTTCATTTCGACAGACAAGGATAAAATTGGAAGAAAATGATACTATTAGTCTTGACCTTGGGATGGGAATCAGTTCTACGGCTGGAAATAGATCAAATGGGCAAGGGAAAATACTGCTATCCGAATTTGGGAATAGCAGTCATACTCACACGAGCAATTCCAATTTCAAGTTTGTTCATAATACTACCTCAGCTCCTGTATACTACGGTGTTCTAAATAACGGTTCAAATCCGTTTGGCTCTAGAGAAAATAGAAATGATGGTTCGTCTTTAAACCATTCCGCTAATCCTTGCTCACAGACCATGGGAAGAATACTAATGGGGCCATGA	1638	0.431	MEVTTTNSGEGTPTDPNRNGSVQNSMARYKLMSPAKLPISRSPCITIPAGYSPTSLLESPVLLSNMKVEPSPTTGSLLQALNCSMASATFPVTSACFNTSTVNGRKSSFFEFKPQDRNMVPADFNNHVSEKSTQMEGSGNGQSFRSSPLNENEIEDQSNELSLSSSPVHMVSSGASAPVNVNSDEPNHKGSTANGPQSSNDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPSNRYSAGSVMSTQGERSDNRASSLAVRDDKASNSPEQSVVATNDLSPEGAGFVSTRTNDGVDDDDPFSKQRKMELGNADIIPVVKPIREPRVVVQTMSEIDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAARSSSHDMAGHATSFRQTRIKLEENDTISLDLGMGISSTAGNRSNGQGKILLSEFGNSSHTHTSNSNFKFVHNTTSAPVYYGVLNNGSNPFGSRENRNDGSSLNHSANPCSQTMGRILMGP*	546

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr5g3352	545	ProSiteProfiles	WRKY domain profile.	200	258	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mtr5g3352	545	SUPERFAMILY	WRKY DNA-binding domain	355	423	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Mtr5g3352	545	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	20	525	IPR044810	GO:0003700
	Mtr5g3352	545	SMART	WRKY_cls	363	422	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mtr5g3352	545	SMART	WRKY_cls	199	257	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mtr5g3352	545	MobiDBLite	consensus disorder prediction	130	207	-	-
	Mtr5g3352	545	SUPERFAMILY	WRKY DNA-binding domain	198	258	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Mtr5g3352	545	MobiDBLite	consensus disorder prediction	130	205	-	-
	Mtr5g3352	545	MobiDBLite	consensus disorder prediction	249	323	-	-
	Mtr5g3352	545	MobiDBLite	consensus disorder prediction	514	536	-	-
	Mtr5g3352	545	MobiDBLite	consensus disorder prediction	258	313	-	-
	Mtr5g3352	545	Gene3D	WRKY domain	348	424	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Mtr5g3352	545	Gene3D	WRKY domain	188	259	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Mtr5g3352	545	ProSiteProfiles	WRKY domain profile.	358	423	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mtr5g3352	545	MobiDBLite	consensus disorder prediction	1	22	-	-
	Mtr5g3352	545	PANTHER	TRANSCRIPTION FACTOR WRKY FAMILY-RELATED	20	525	-	-
	Mtr5g3352	545	Pfam	WRKY DNA -binding domain	364	420	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mtr5g3352	545	Pfam	WRKY DNA -binding domain	200	256	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr5g3352	Mtr-Chr5	42457197	42461609	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr5g3352	32	545	WRKY Transcription Factor Family	AT4G26640	53.532	3.36e-174	500

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Mtr5g3352		WRKY	1.3e-25	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr5g3352	-		-	gmx:100816583	806.208

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr5g3352	5	42457197	42461609	Mtr5g3352	5	42457197	42461609	ECH
	Mtr3g1421	3	25502624	25509798	Mtr5g3352	5	42457197	42461609	PCT