Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3350 ATGATGCCGAGTGTTAACTCCGGTTCATCCGACAAAGACTCCGAGGCATTTGCAGAAACCGATCCAACCGGTCGGTATGGTAGATATCCCGAACTATTAGGATGCGGTGCTGTGAAGAAAGTGTATCGTGCATTCGATCAAGAAGAAGGAATAGAGGTAGCATGGAACCAAGTGAAGCTAAGAAACTTCTGTGATGAACCTGCTATGGTAGAGAGGCTTTATTCTGAAGTGAGGTTATTGAGAAGCTTGACAAACAAAAACATCATTGAACTTTATAGTGTTTGGAGCGATGATCGAAACAACACGCTTAATTTCATCACCGAGGTTTGTACAAGTGGGAATTTGAGAGAGTATAGGAAGAAACATAGACATGTTTCTATGAAGGCATTGAAGAAATGGTCAAGGCAGATTCTGAAAGGGTTGAATTATTTGCACACTCATGAGCCTTGCATCATTCATAGAGATCTCAATTGCAGTAATGTGTTTGTTAATGGGAATGTTGGCCAGGTTAAGATTGGTGACTTGGGTTTAGCAGCAATTGTGGGGAAGAATCATATTGCACACACAATTCTCGGCACACCAGAGTTTATGGCTCCAGAATTATACGACGAAGACTACACAGAATTGGTGGACATATACTCATTTGGTATGTGTGTATTAGAAATGGTGACATTGGAAATTCCTTATAGTGAGTGTGACAATGTTGCCAAAATATACAAGAAAGTTTCTTCTGGTATAAGACCTGCTGCAATGAACAAGGTCAAAGATTCAGAGGTAAAGGAATTCATTGAGAGGTGTCTTGCTCAGCCAAGGGCTAGACCTTCTGCTGCGGAGCTTCTTAAAGATCCTTTCTTTGATGAACTTGTTGGTGATGATGAAGATGAAGACGACGAAAATGATTATGTTAATTCATACTAA 918 0.4041 MMPSVNSGSSDKDSEAFAETDPTGRYGRYPELLGCGAVKKVYRAFDQEEGIEVAWNQVKLRNFCDEPAMVERLYSEVRLLRSLTNKNIIELYSVWSDDRNNTLNFITEVCTSGNLREYRKKHRHVSMKALKKWSRQILKGLNYLHTHEPCIIHRDLNCSNVFVNGNVGQVKIGDLGLAAIVGKNHIAHTILGTPEFMAPELYDEDYTELVDIYSFGMCVLEMVTLEIPYSECDNVAKIYKKVSSGIRPAAMNKVKDSEVKEFIERCLAQPRARPSAAELLKDPFFDELVGDDEDEDDENDYVNSY* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3350 305 Pfam Protein kinase domain 31 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g3350 305 SUPERFAMILY Protein kinase-like (PK-like) 23 286 IPR011009 -
Mtr5g3350 305 MobiDBLite consensus disorder prediction 1 22 - -
Mtr5g3350 305 PANTHER SERINE/THREONINE-KINASE WNK11-LIKE PROTEIN 2 305 - -
Mtr5g3350 305 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g3350 305 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 2 305 - -
Mtr5g3350 305 Gene3D Transferase(Phosphotransferase) domain 1 110 290 - -
Mtr5g3350 305 CDD STKc_WNK 25 285 - -
Mtr5g3350 305 PIRSF TyrPK_CSF1-R 116 304 - -
Mtr5g3350 305 PIRSF TyrPK_CSF1-R 28 132 - -
Mtr5g3350 305 Gene3D Phosphorylase Kinase; domain 1 10 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3350 Mtr-Chr5 42432691 42435232 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3350 6 289 MAP Kinase Kinase Kinase AT5G55560 81.338 0.0 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Mtr5g3350 Pkinase 5.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3350 K08867 - gmx:100816060 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3350 5 42432691 42435232 Mtr5g3350 5 42432691 42435232 ECH
Mtr3g1418 3 25475536 25476538 Mtr5g3350 5 42432691 42435232 PCT