Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3343 ATGCCAGAAAATCTCAAAGAACCTCGTCTTGTAACAAGAAAGTTCTTAGCCAAACCTCAACGAGAAGGTGTTGGTGCTGTTGTTAGAAGAAGCATAGGAAGATTTGAGCTCAAGTACTTTGATCCTTTCCTTGTCTTGGATGAATTCTCAGTTGCTGCTCCTTCTGGATTTCCTGATCATCCACATAGAGGTTTTGAGACTGTTACATATATGTTACAGGGTGCAGTAACACATGAAGATTTTGAAGGACACAAGGGAACAATTGAAGCTGGTGACTTGCAGTGGATGACTGCTGGTAGAGGGATAGTGCACTCAGAAATGCCTGCTTCTCAAGGAATCCAAAAGGGTCTACAGCTATGGATCAACCTTGCTTCCCAGCATAAAATGATTGAACCAAAGTATCAAGAAATTTTAAGCAAGGACATAGTAGAAGCTACAAAAGATGGTATCAAGGTTAGAGTTATTGCAGGGGAAGCTCTTGGAATAAAGTCACCAATTTACACAAGGACACCAACAATGTATTTGGACTTTACTCTTAAACCTGGAGCACACTTGCAACAACTTGTACCTAAATCTTGGAATGCTTTTGTGTACATATTGGAAGGAGAGGGTATTTTCGGAAACAAAAATTCTCATCCTACAACCTCTCACCATATTCTCCTTCTAGGGTTTGGGGATGGTCTAGAGGCATGGAATAATTCTTCTAAGGTACTTAGATTCATTTTGGTTGGAGGTGAACCATTAGGTGAACCAGTGGTACAATTTGGACCCTTTGTGATGAATACTCAAGAAGAGATTGACCAAACTATTGATGATTTTGAAAATTATACCAATGGTTTTGAGAAAGCAAAACATTGGAGGTCTAGTGAAGTTGGTTTAGATCTTTGA 888 0.3953 MPENLKEPRLVTRKFLAKPQREGVGAVVRRSIGRFELKYFDPFLVLDEFSVAAPSGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIEAGDLQWMTAGRGIVHSEMPASQGIQKGLQLWINLASQHKMIEPKYQEILSKDIVEATKDGIKVRVIAGEALGIKSPIYTRTPTMYLDFTLKPGAHLQQLVPKSWNAFVYILEGEGIFGNKNSHPTTSHHILLLGFGDGLEAWNNSSKVLRFILVGGEPLGEPVVQFGPFVMNTQEEIDQTIDDFENYTNGFEKAKHWRSSEVGLDL* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3343 295 Gene3D Jelly Rolls 22 274 IPR014710 -
Mtr5g3343 295 CDD cupin_pirin_C 171 247 - -
Mtr5g3343 295 Gene3D Jelly Rolls 143 248 IPR014710 -
Mtr5g3343 295 SUPERFAMILY RmlC-like cupins 9 288 IPR011051 -
Mtr5g3343 295 Pfam Pirin 28 121 IPR003829 -
Mtr5g3343 295 CDD cupin_pirin_N 26 123 - -
Mtr5g3343 295 PIRSF Pirin 7 287 IPR012093 -
Mtr5g3343 295 Pfam Pirin C-terminal cupin domain 174 278 IPR008778 -
Mtr5g3343 295 PANTHER OS09G0484800 PROTEIN 4 290 - -
Mtr5g3343 295 PANTHER PIRIN-RELATED 4 290 IPR012093 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3343 Mtr-Chr5 42354773 42357585 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3343 3 284 Calmodulin-binding Proteins AT3G59220 60.211 2.85e-128 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3343 K06911 - gmx:100790637 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3343 5 42354773 42357585 Mtr5g3343 5 42354773 42357585 ECH