Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3340 ATGAAAAGGAAATTCACGACATTAAGGGATGAAACTGAATCTGAAATCGAGTTTCAGTCTTTGTATGTAACCAATTATCATCTCGAAGATAACGATGGCGAACCCGTGTGTTTCTCTGTTCTACCGTTTAAATGGGGCGCTTCTAAGGTTTCCAAAGTTGATGATACCGAAAAGGGGTTGAAGATATTTTTGCATGGATCTGCTGACAATGGGTTGCAGACAATTTTCATGGAGGTTACTGCATGGAAGTTTGATCTAACTGGTTTGAAACCTGAGGTATCGTTGTTGTCGAAGGATAAAAGATGGATCAAGCTTCAAAAGCCGAGGAAAAGCTTTCAGAAAACTGTGAAAAATGCTTTGATTACTCTCTATTTTCTTCGTTGTGCTAAGAAAAATCCTCGATTATCTGTTGAGTCTTTTTGGTGCAACGTGTGCAAGGATAAGGATTTGAGCTCTTATGGGTTTAAGCCTTCACAAAAGGATTTACTGGATCATATGTCTCTGATTGGTGAAGCTACTACAAGAGATGTTGGCTTAGCTAATTCTAAGCTTTTGCTCTCAGTTTTAGGGGACAAGTCCGGGGATCAGAAACCATCTGATGAGGAATTTGATACTAACAATGATATCATAGAAGAATCTGATGAAGACTCAAAAGTAGAGGATGATTTGTTTGATTCTTTTTGTGCATTGTGCGACAATGGCGGTAATCTCATTATGTGTGATGGAGCATGCATGAGGTCATTTCATGCTACTAAGGTGGATGGTAGGGAATCTTTATGTGATTCTCTTGGTTTTACCAAGAAGGAAGTTGATGATATTGAGACGTTTTATTGTAAGAATTGTGAATATCATCAGCATCAATGCTTTGCATGTGGCGAGCTGGGTTCTTCTGATAAAGATAAGGATGCTGAGGTCTTTAAATGTGCTTCTGAAACCTGTGACCGTTTCTATCATCCACATTGCATTGCCCCATTAGTTAAGCATGTTTCCGAGGATCTTGAGAAAAATAATGCTGATGGGCAGACATTTTCTTGTCCAATTCATTTTTGCTGCGTCTGTGAAGGCTTGGAAAATAAGATGGACCCTGAGTTGCAATTTGCAGTTTGTAACCGTTGTCCAAAGTCATATCATCGCAGATGTTTGCCTACAGAGATTGCGTTTGATGACATTGATGATGTTGCAACAAGGGCTTGGGAAGGTCTTTTGCCAAACAATCGTATCCTTATATATTGCCTAAATCATGAGATCAGTGATGAGCTTGGGACTCCTGTAAGAGATCATATAAAATTCCCCGACACTAGAGCTAGTGTTCGGGACATCAATACTCCTGATAAGAAGATGAAGCCTACAACTACAGAGGGGGTTAAATTTAAGAGCAATGTTGACTTTGTTAAATCATCTGATAAGAGCACTGCAGAAGGATCTAAAGTGACTGGAAAACTGCCTTCTAGTAAAATTGGCAGCAAAAAGTCCTCCGGAGAGACCAGTGATAAGCTTGATACTTCTGTAAGAGATCATATAAAATTCCCCGACACTAGAGCTACTGTTCCGGAAATCAATACTTCTAATAAGAGGATGAGGCCTACAACTACAGAGAGAGTTGAATTGAAGAACAACGTTGGCTTTGTTAAATCATCTGGCAAGAGCACTGCAGAAGGATCTAAAGTGACTGGAAAACTGCCTTCTAGTAAAATTGGCAGCAAAAAGTCCCCTGAAGAGACCAGTGATAAGCTTGAGACTCCTGTAAGAGATCATATAAAATTCCCCGATACTAGAGCTACTGTTCCGGAAATCAATACTTCTAGTAAGAGGATGAGGCCTACAACTACAGAGAGAGTTGAATTGAAGAACAATGTTGGCTTTGTTAAATCATCTGGCAAGAGCACTGCAGAAGGATCTAAAGTGACTGGAAAACTGCCTTCTAGTAAAATTGGCAGCAAAAAGTCATTTGAAGAGACCAGTGATAAGCTTGAGACTCCTGTAAGAGATCATACAAAATTCCCCGACACTAGAGCCACTGTTCCGGAAATCAATACTTCTAATAAGAGGATGAGGCCTACAACTACAGAGAGAGTTGAATTGAAGAACAATGTTGGCTTTGTTAAATCATCTGGCAAGAGCACTGCAGAAGGATCTAAAGTGACTGGAAAACTGTCTTCTAGTGAAATTGGCAGCAAAAAGTCCTCGGAAGAGACCAGTGATAAGCTTGAGACTCCTGTAAGAGATGATATAATATTCCCTGACACTAGAGCTACTGTTCTGGAAATCAATACTTCTAATAAGAGGATGATGCCTACAACTACAGAGAGAGTTGAATTGAAGAACAATGTTGGCTATGTTAAATCATCTGGCAAGAGCACTGCACATGGATCTAAAGTGCCCGGAAAACTGCCTTCTAAAACTGGTAGCAAAAAGTCTACTGAAAAGATCGTATCTGGTTCAGATGTTTCAAGGACCCCGGAATCAAAGGAAATGTCAAGTAAGTGTGTGACTGAATACAAGTCATCCTCAAAGAATTTGTCTGAAAAGGCGATTTCTTGTTCAGATATTTCATGGAACCCGGAATCAAATAAAATAAGTTTGACTGAAGAAAACAAGAAGTCAAATTCAAAGTTGTCTGGGAAGGTGATTTCTGGTTCACATATATCAAGTAAACCAAAATCAAATGAAAGATCTGAAACGGGTTTGACTAAAAACAAGAAGCCAATGCCCAAGTGTGAGGTAAAAAAGCACCCAACTGGTCAGAAATTGTGTGCTTCTATGAATAAAGGTTCTGAGCAAATAAAGTACGACAATCAGGTCGATGATGCAGATAATCAGACCCTGTCGATCATGCCTCTTAGAAGTTTATTGCCTCCACCAGATGCTGATTCAGAGAAGGGGCTTGTGGATTCGTTTAAAGAAGCTAGATCCTCAATATTGTTGGAGGGTGTGATAAAAAAGCACAAGTTGGGAGATGTTGGGGATAAGGCCATTACAATGAGGAAGCTGGATGACTCAGTTGACTTGACTACTAAACAGAAGGTATTACCCAAGGAGCATGGTCACATGGACAGTGACAAGTTGGCTGCTAAAAATATTATGGAGAGTAAGCTGGATGACTCAGTTGACTTGACTACTAAACAGAATGTAGTAGCCCAGGAGCATGGTCACATGTACGGTGACAAGTTGGCTGCTGTTATGGATGGTGATTCCGGGGACAAGCTCATGCCGAATCATGATCTCTTAAAGTCAACTGATGATCAAGAACTAGCACCTGTAAATGAAAGTAAGGAAAAAAGCTCACATGATGGTAACGCTGACCAGGAGAGTCAAGACAAACATGAATTTAAGACAAGCAAGTCTTTGAAGACAGCTGGGAAGAGAAATCAAATTGATAAAAATGATCGCGATTCTTCTCATGTCAACAAGCATTCAGCTCGTTTTGCAGCTGCTCGTAAATCAAAATTTGGAACTGGTCTAAATGTAAAATTTGCACCCATCCATTCAGGTGGTTGGCTCGAAGAGTAG 3510 0.4009 MKRKFTTLRDETESEIEFQSLYVTNYHLEDNDGEPVCFSVLPFKWGASKVSKVDDTEKGLKIFLHGSADNGLQTIFMEVTAWKFDLTGLKPEVSLLSKDKRWIKLQKPRKSFQKTVKNALITLYFLRCAKKNPRLSVESFWCNVCKDKDLSSYGFKPSQKDLLDHMSLIGEATTRDVGLANSKLLLSVLGDKSGDQKPSDEEFDTNNDIIEESDEDSKVEDDLFDSFCALCDNGGNLIMCDGACMRSFHATKVDGRESLCDSLGFTKKEVDDIETFYCKNCEYHQHQCFACGELGSSDKDKDAEVFKCASETCDRFYHPHCIAPLVKHVSEDLEKNNADGQTFSCPIHFCCVCEGLENKMDPELQFAVCNRCPKSYHRRCLPTEIAFDDIDDVATRAWEGLLPNNRILIYCLNHEISDELGTPVRDHIKFPDTRASVRDINTPDKKMKPTTTEGVKFKSNVDFVKSSDKSTAEGSKVTGKLPSSKIGSKKSSGETSDKLDTSVRDHIKFPDTRATVPEINTSNKRMRPTTTERVELKNNVGFVKSSGKSTAEGSKVTGKLPSSKIGSKKSPEETSDKLETPVRDHIKFPDTRATVPEINTSSKRMRPTTTERVELKNNVGFVKSSGKSTAEGSKVTGKLPSSKIGSKKSFEETSDKLETPVRDHTKFPDTRATVPEINTSNKRMRPTTTERVELKNNVGFVKSSGKSTAEGSKVTGKLSSSEIGSKKSSEETSDKLETPVRDDIIFPDTRATVLEINTSNKRMMPTTTERVELKNNVGYVKSSGKSTAHGSKVPGKLPSKTGSKKSTEKIVSGSDVSRTPESKEMSSKCVTEYKSSSKNLSEKAISCSDISWNPESNKISLTEENKKSNSKLSGKVISGSHISSKPKSNERSETGLTKNKKPMPKCEVKKHPTGQKLCASMNKGSEQIKYDNQVDDADNQTLSIMPLRSLLPPPDADSEKGLVDSFKEARSSILLEGVIKKHKLGDVGDKAITMRKLDDSVDLTTKQKVLPKEHGHMDSDKLAAKNIMESKLDDSVDLTTKQNVVAQEHGHMYGDKLAAVMDGDSGDKLMPNHDLLKSTDDQELAPVNESKEKSSHDGNADQESQDKHEFKTSKSLKTAGKRNQIDKNDRDSSHVNKHSARFAAARKSKFGTGLNVKFAPIHSGGWLEE* 1170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3340 1169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 224 284 IPR013083 -
Mtr5g3340 1169 MobiDBLite consensus disorder prediction 468 490 - -
Mtr5g3340 1169 CDD PHD_SF 349 381 - -
Mtr5g3340 1169 MobiDBLite consensus disorder prediction 192 217 - -
Mtr5g3340 1169 MobiDBLite consensus disorder prediction 542 568 - -
Mtr5g3340 1169 MobiDBLite consensus disorder prediction 1064 1146 - -
Mtr5g3340 1169 SMART PHD_3 287 349 IPR001965 -
Mtr5g3340 1169 SMART PHD_3 227 282 IPR001965 -
Mtr5g3340 1169 SMART PHD_3 350 415 IPR001965 -
Mtr5g3340 1169 MobiDBLite consensus disorder prediction 623 739 - -
Mtr5g3340 1169 PANTHER ENHANCED DOWNY MILDEW PROTEIN 652 729 - -
Mtr5g3340 1169 PANTHER ENHANCED DOWNY MILDEW PROTEIN 494 570 - -
Mtr5g3340 1169 PANTHER ENHANCED DOWNY MILDEW PROTEIN 573 649 - -
Mtr5g3340 1169 PANTHER ENHANCED DOWNY MILDEW PROTEIN 835 1029 - -
Mtr5g3340 1169 PANTHER ENHANCED DOWNY MILDEW PROTEIN 731 837 - -
Mtr5g3340 1169 PANTHER ENHANCED DOWNY MILDEW PROTEIN 13 491 - -
Mtr5g3340 1169 MobiDBLite consensus disorder prediction 468 582 - -
Mtr5g3340 1169 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 835 1029 - -
Mtr5g3340 1169 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 573 649 - -
Mtr5g3340 1169 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 731 837 - -
Mtr5g3340 1169 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 13 491 - -
Mtr5g3340 1169 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 494 570 - -
Mtr5g3340 1169 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 652 729 - -
Mtr5g3340 1169 MobiDBLite consensus disorder prediction 700 726 - -
Mtr5g3340 1169 MobiDBLite consensus disorder prediction 871 885 - -
Mtr5g3340 1169 MobiDBLite consensus disorder prediction 1067 1137 - -
Mtr5g3340 1169 MobiDBLite consensus disorder prediction 886 912 - -
Mtr5g3340 1169 MobiDBLite consensus disorder prediction 623 647 - -
Mtr5g3340 1169 CDD PHD2_NSD 287 348 - -
Mtr5g3340 1169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 370 IPR013083 -
Mtr5g3340 1169 MobiDBLite consensus disorder prediction 648 670 - -
Mtr5g3340 1169 MobiDBLite consensus disorder prediction 780 835 - -
Mtr5g3340 1169 MobiDBLite consensus disorder prediction 800 820 - -
Mtr5g3340 1169 Pfam Cytosine specific DNA methyltransferase replication foci domain 23 138 IPR022702 -
Mtr5g3340 1169 MobiDBLite consensus disorder prediction 491 512 - -
Mtr5g3340 1169 MobiDBLite consensus disorder prediction 861 914 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3340 Mtr-Chr5 42307036 42315139 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3340 225 322 PHD Transcription Factor Family AT5G58610 33.663 4.99e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3340 - - mtr:MTR_5g094150 2323.89