Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3331 ATGGACGACGTGCCGGTGTCGGAACCTACACTGGATCCGCCACCGGAGATTGAAAACGGAGGAGGAGAGCAACAAGAGGAGCGGTTGAGCAAGAAGGCGAAGGTGGAGGAGAATGAGAATTCGGAGGCGGAATTGAAACGAGTGGCGGAGATTGTTTTGGTGTTATCGACGATGGCGACGATGCGAAGTGGAAAGAAGCCAACTGATGTTGAGGTTGAGTTGATGAGAGAAGCGAGGACGAAGCTGGCGGTACTATGTCAAGGGATTGCTCCGAAGGATATTGTTGGTGGTGAAGCTATTGGTAGTGTGATTGATGATCTTGGATTGAATGCTAAGGTTGTGGATCAGAGGTTAGGGTTTCGAGTGCCGAAGATGTCGATTGCTGAGAAGTATTTGTTTGCAAAATCAAAGATGGAGGAATCAAAGAAATGCGCTGCACCTTCTACAACATACACATCTCAACCCTTTCAAACAAACACCGGTGGAATGGTTGACAATCGTGTACCAACAACTGCTGTTCGAATGTTTGCGTCTGATAAATCAAACCACACATCAATGCCTTCTACAGTTTCCATGGCGTCTATGCCTCCCCATCTTGCTGCAGGATCTTCTGCACCATTGCAATATCAATCAACCAGCAACGAAGTGAGACCCCCCATTGTTTCTGGTGTAATGCCTAGCAGTCACATGGGGAGAAATCCATCTTCTGTAGCAATGCCTAGAGTTGAAAACCCACAGTTTAAAGTTACTGCAGGATTGAGTGGGGCTCCTTATGTCCTTCAGGTTCAAGCAAATTCATTGGCAAACCAATCATCAGTGAATGCTCCTTCATGGTCAATACAGACTCAACCTGTGTCATTAGGTAGAAATGTATCAGAAAACAAGGCGCCTGCTCATAACTCTGTCAAGGTTGAAGGAACTGCTGATGCAACTGTATCAAGGGCAGGTCCACAAGTAACAGCAGCTCAGAACATTAGGCCATTCATTACTCAAACGGGACCTGGAAATATGTCTGCTATGCACCAGCCGTTGCAGGGTGGGAATATGGTTCGGCCTCCTTTGATACCTAGTCACTCTGATATTGCAAAGGTTGTCCAGAAGTTGTTAATACCAAAGCTTCCTGATCATCCCACATGGACTCCTCCGTCAAGAGATTATATGAGTAAGAATTTCACATGTCAGACGTGTGAGCTCACTGTCAGTGAGGTTGATTCTGTTCTTCTCTGTGATGCCTGTGAAAAGGGATTTCACTTGAAGTGCCTGCAGCCATCAGTCATTAGAGGAATTCATAATAGAGTTGATTGGCACTGCATGAAGTGCTTGGGTTTAAGCGGTGGAAAGCCTTTGCCTCCAAAATATGGCCGTGTGATGCGATCCTCAATTACATCACCAAGTTTTCCCTCTAATTCAGCTGGTATTCAACCATCTTCAGAGAAGAAACCAGATAACTTAGATCCGAAGGTCAGCCCACAGATGTTAACAACAAATGGAAACTCTGTTCCAACTGATTCCAGTACCAATCACAATACTGAGCCGTCATTTGACTCAAATACCCCAGATACGAGAGATATACAAGGTTCCAACATTTCATCTAGCATTGAAACCATTGACGAGAAGCCTGATCCAAACATATGTGTGAAATCTGCAGCTTATAGTGCTTCCACTGGCGTGCAGGGTGAAGGTTATGCTGAACAAATAGATTCTAAGGCTTTGACCTGTAAAGATACTTCTGAATCTGAAACTCTTCCTAACATATCCGAGCTGGCTAAAAGTGGAAACTTACAATCATCACCAGGTTCTCAAGTTGAGAATGCAGTGTCACAGGACAATGCTGAAATATCATCTGATAGACACGATAGCAGTAGCTTTATTATTAGTAATCAAAAGGAATCTCATGAAGGAGAAAGTACAACTTATGATATCAAGCGTGATGACCTAGATGCTGCACAACCGAATTCTGTCAGAGGTTCTGGAACTAATACTGAAGGTATTCAGCACTGTGCTTTATCTTCAGATAGCTCACATGCTGTAGAATGGATTGGTGATGTTGTACAACTTGTAGATGAGAAAAAACATTACCAATCTTGCTGCATTGATGGAGTAACATATAGGCTGCAAGGTCATGCATTTTTCACGTCCAGCCATGGCAAACTAACACCTTCTAAACTTCAGTCCATGTGGGAAGATTCCAAAACTGGGGTGAAGTGGGTTAAGGTGACAAAGTGCTACTTTCCTGATGATTTGCCGGGGAATATTGGTCATCCTTGTATATCTGAAGTCAATGAGGTTTATGAATCTAATAGTGATAGAGTTGAAATGGCTAGTTCTATCCGAGGCCCTTGTGTAGTCCTTCCATATGATAAATTTAAACAAGAAAATGACAGAAGATGTCAATTTGGAGTTGAAGCAAGTGCTAGTGTACAACCCATTTTCCTTTGCAGGTGGTTTTATGATGAAATCAAAAAGTCATTTCAACCTGTTATCAGTTGA 2490 0.4329 MDDVPVSEPTLDPPPEIENGGGEQQEERLSKKAKVEENENSEAELKRVAEIVLVLSTMATMRSGKKPTDVEVELMREARTKLAVLCQGIAPKDIVGGEAIGSVIDDLGLNAKVVDQRLGFRVPKMSIAEKYLFAKSKMEESKKCAAPSTTYTSQPFQTNTGGMVDNRVPTTAVRMFASDKSNHTSMPSTVSMASMPPHLAAGSSAPLQYQSTSNEVRPPIVSGVMPSSHMGRNPSSVAMPRVENPQFKVTAGLSGAPYVLQVQANSLANQSSVNAPSWSIQTQPVSLGRNVSENKAPAHNSVKVEGTADATVSRAGPQVTAAQNIRPFITQTGPGNMSAMHQPLQGGNMVRPPLIPSHSDIAKVVQKLLIPKLPDHPTWTPPSRDYMSKNFTCQTCELTVSEVDSVLLCDACEKGFHLKCLQPSVIRGIHNRVDWHCMKCLGLSGGKPLPPKYGRVMRSSITSPSFPSNSAGIQPSSEKKPDNLDPKVSPQMLTTNGNSVPTDSSTNHNTEPSFDSNTPDTRDIQGSNISSSIETIDEKPDPNICVKSAAYSASTGVQGEGYAEQIDSKALTCKDTSESETLPNISELAKSGNLQSSPGSQVENAVSQDNAEISSDRHDSSSFIISNQKESHEGESTTYDIKRDDLDAAQPNSVRGSGTNTEGIQHCALSSDSSHAVEWIGDVVQLVDEKKHYQSCCIDGVTYRLQGHAFFTSSHGKLTPSKLQSMWEDSKTGVKWVKVTKCYFPDDLPGNIGHPCISEVNEVYESNSDRVEMASSIRGPCVVLPYDKFKQENDRRCQFGVEASASVQPIFLCRWFYDEIKKSFQPVIS* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3331 829 MobiDBLite consensus disorder prediction 1 40 - -
Mtr5g3331 829 Gene3D - 680 828 IPR043151 -
Mtr5g3331 829 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 16 828 - -
Mtr5g3331 829 SUPERFAMILY FYVE/PHD zinc finger 384 446 IPR011011 -
Mtr5g3331 829 MobiDBLite consensus disorder prediction 21 40 - -
Mtr5g3331 829 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 16 828 - -
Mtr5g3331 829 MobiDBLite consensus disorder prediction 458 477 - -
Mtr5g3331 829 MobiDBLite consensus disorder prediction 590 632 - -
Mtr5g3331 829 CDD PHD_SF 392 440 - -
Mtr5g3331 829 Pfam PHD-finger 393 440 IPR019787 -
Mtr5g3331 829 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 357 441 IPR013083 -
Mtr5g3331 829 CDD BAH 700 827 - -
Mtr5g3331 829 MobiDBLite consensus disorder prediction 454 527 - -
Mtr5g3331 829 SMART PHD_3 392 441 IPR001965 -
Mtr5g3331 829 MobiDBLite consensus disorder prediction 633 649 - -
Mtr5g3331 829 MobiDBLite consensus disorder prediction 590 661 - -
Mtr5g3331 829 ProSiteProfiles BAH domain profile. 701 828 IPR001025 GO:0003682
Mtr5g3331 829 ProSiteProfiles Zinc finger PHD-type profile. 390 443 IPR019787 -
Mtr5g3331 829 ProSitePatterns Zinc finger PHD-type signature. 393 440 IPR019786 -
Mtr5g3331 829 Coils Coil 26 46 - -
Mtr5g3331 829 MobiDBLite consensus disorder prediction 488 527 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mtr5g3331 PHD 4.5e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3331 - - gmx:100807139 1175.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3331 5 42207653 42218107 Mtr5g3331 5 42207653 42218107 ECH