Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3313 ATGACAGTACACATGCTCATCAAAGTTCAGAGGTGGCTGTTGCAGACAAAGGTATGGAGATTTGTGGGATTTGCTTCAGCTGCTGTTGGACTGGTTTGTTATGCTCTAAGCTCTTCCTTCAACTATCTATTTGGAAATTGGAATTTGTTGAAGATAATTCTTTACACTGTTTTCAGTTTCATCATTTGCATCATGATTTTGTATGAAAATATATGGAAACAGTCTAGAAGTCTTCGGTTCAAAGCTCATACAGCTTTTTTAGTATTGACAATCACCTCTGTCTATTCGTTTTACTTCGATAAAGTGGTAAATGGAAAACCAGATGCTTATAGCCTCATTTCTTGTGCTGCCTTTGCTATCATGTCACTGAGTTTGTCGAGGCAATCTCATTGTGGATTCGAAGTGGATCTTCTTTACTTTTTTCTTGGATGTCTAACTGTGTTACTCATGAAGATTAAATTCCAGTTATTCATTATTGGAGCAGGTTTCGCCTCCTCTGCTACTCGTTGTTTCACAGAGGTTTTCCACGGATCAACATTTCAGCTTCTAAATTTTGCTAATGCAGTTGCTGATGGAAGCCCTTCCATTTGGTGTTTATTCAAAATGCTTGCAATCTTTGAGACTTTGCATCATCTGATATCGAAATTCCACTTGGGTCCTGATTCTTCGGTGAAGGAAGCTGCAGTTACAGTCCAAAACAGATTAGGAGAAGCAATCAGGGACCTTTTCTTGAAACTAAATTATCTGACCTTCCGTGTCCCAGCAGCAAAGAAAGTTTCTCGGTCTGATGGTCGACATCATCCAACGGCAGTCCAGATCATTAGCTACGTCACTTCTGCTTGTAGGTCACGCCACACGCTCGAACAAGTTTTGCAGGAATATCCCAAGGTGAATAATGGAGTAGTAGTGAAAGATTCTTTTATAGAACAGATGGAATGGATAATGGATATGTTAGAGAAAAGATTGACATATAAGTCCAAAGAGTACAGAGAACTTGCTTTGCGCTATCTTTTCATGATGAATAATAGGAGGCACATAGAAGCTATGATTAAAAGCTTGGACTTGGAAACCATATTTGGTAATGATTGGTTCCAAAGAAATCAAGCGAAATTCCAACAAGACCTTGATCTTTATCAAAGGTATTCATGGAATAAAGTGTTGGAATTTTTGAAGTTGGACAACAATGACTGTGCGGCACTGAATGGTGATGTTGCAGAAGATATATTGAAAGAAAAGCTAAAATTGTTCAACAAGCAATTTGAAGAGTTCAGTCCAATTGGTTTGTATATGATAAGAAGCTTAAAGAAGAAATAA 1314 0.3798 MTVHMLIKVQRWLLQTKVWRFVGFASAAVGLVCYALSSSFNYLFGNWNLLKIILYTVFSFIICIMILYENIWKQSRSLRFKAHTAFLVLTITSVYSFYFDKVVNGKPDAYSLISCAAFAIMSLSLSRQSHCGFEVDLLYFFLGCLTVLLMKIKFQLFIIGAGFASSATRCFTEVFHGSTFQLLNFANAVADGSPSIWCLFKMLAIFETLHHLISKFHLGPDSSVKEAAVTVQNRLGEAIRDLFLKLNYLTFRVPAAKKVSRSDGRHHPTAVQIISYVTSACRSRHTLEQVLQEYPKVNNGVVVKDSFIEQMEWIMDMLEKRLTYKSKEYRELALRYLFMMNNRRHIEAMIKSLDLETIFGNDWFQRNQAKFQQDLDLYQRYSWNKVLEFLKLDNNDCAALNGDVAEDILKEKLKLFNKQFEEFSPIGLYMIRSLKKK* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3313 437 PANTHER EXOCYST COMPLEX PROTEIN EXO70 162 422 IPR004140 GO:0000145|GO:0006887
Mtr5g3313 437 PANTHER EXOCYST COMPLEX PROTEIN EXO70 9 150 IPR004140 GO:0000145|GO:0006887
Mtr5g3313 437 SUPERFAMILY Cullin repeat-like 161 423 IPR016159 -
Mtr5g3313 437 Gene3D Exocyst complex component Exo70 146 424 - -
Mtr5g3313 437 Pfam Exo70 exocyst complex subunit 163 422 IPR046364 GO:0000145|GO:0005546|GO:0006887
Mtr5g3313 437 PANTHER PROTEIN, PUTATIVE-RELATED 9 150 - -
Mtr5g3313 437 PANTHER PROTEIN, PUTATIVE-RELATED 162 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3313 Mtr-Chr5 42030098 42032337 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3313 162 426 EXO70 exocyst subunit family AT5G58430 45.756 2.07e-55 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3313 - - mtr:MTR_5g093530 494.582