Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3311 ATGGCATCCATGGAACGCCTTGTTATTGAACTCAGCAATCCTGATCTCAGAGAAAATGCTCTTCGTGTTCTCTCCAAGAAAATGACGTCATTTCAGGAGCTTGCACCTTTATTGTGGAATTCTTTTGGTACTATCACAATACTTGTGCAAGAAATAATTTCAATATATCCTACTCTTTCATCAGAGAATCTTACTCCAACACAATCAACTCGAATGTGCGATGTTCTTGCATTACTGATGTGTGTGGCATCTCACCCAACTACAAAGATGTCATTCCTCAATGCTAACATGCATTTATATTTATATCCATTCCTTCAAACAACAAGCGAGTTAACACAATATGAGTGGTTGAGGCTTGGTAGTCTTGGAGTCATTGGTGCTTTGGTGAAGGTTAACACCAAAGAAGTCATGAGTTTCCTTCTTCCAAATGAAATAATTCCACTATGCTTAGGCTGTATGGAAAACGACAAAGAGCCATCAAAATCGGTTGGAACATTTATCATTCAGAAAATGTTGTTAGACAATGCTGGTCTAGCTTATGTTTGTGATACAGCAGAGCAATTTTTTACAGTAGCTCGAGTTTTTGACATGATGTTGTCAAGTCTTAAGAATCAACATTCACCTCGTTTGTTGAAGCTTATAATTCGATGCTATTCTCGTTTGTCTGAACATAGCAGGGCTCGCGATGCATTAACAAGTTGTCTTCCAAACATGCTCAAAGATTTCAATTTCATCAATTGTCTTTATGAAGATTCAACAACTTGGAGGTGCATAAAAAAGTTGTATGAAAATCTTGGGATGAATCAAGCTTCTTTGGTACCTAGTGGATGA 831 0.3755 MASMERLVIELSNPDLRENALRVLSKKMTSFQELAPLLWNSFGTITILVQEIISIYPTLSSENLTPTQSTRMCDVLALLMCVASHPTTKMSFLNANMHLYLYPFLQTTSELTQYEWLRLGSLGVIGALVKVNTKEVMSFLLPNEIIPLCLGCMENDKEPSKSVGTFIIQKMLLDNAGLAYVCDTAEQFFTVARVFDMMLSSLKNQHSPRLLKLIIRCYSRLSEHSRARDALTSCLPNMLKDFNFINCLYEDSTTWRCIKKLYENLGMNQASLVPSG* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3311 276 Pfam Cell differentiation family, Rcd1-like 7 265 - -
Mtr5g3311 276 PANTHER CELL DIFFERENTIATION, RCD1-LIKE PROTEIN 1 266 - -
Mtr5g3311 276 SUPERFAMILY ARM repeat 12 242 IPR016024 -
Mtr5g3311 276 Gene3D - 1 266 IPR011989 -
Mtr5g3311 276 PANTHER UNCHARACTERIZED 1 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3311 Mtr-Chr5 41992908 42010185 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Mtr5g3311 Rcd1 8.6e-98 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3311 K12606 - fve:101293962 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3311 5 41992908 42010185 Mtr5g3311 5 41992908 42010185 ECH
Mtr3g1327 3 24311980 24319424 Mtr5g3311 5 41992908 42010185 PCT