Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3295 ATGATTTATGGTAGGTGTGCTGCTTGCAAGAGTCAAAGAAGAAGGTGCCCTTCTGATTGCATTTTCTCTCCATATTTTCCAGCCAATAATCCTCAAAGATTTGCTTCTGTCCACAAAATCTATGGTGGTGGCAATGTTGGAAAAATGCTTCAGCAATTACCTCACTATGTAAGAGAACAAGCTGCAAATACTCTATATTTAGAAGCACAATGTAGGATTCAAAATCCAGTTTATGGATGTGTTGGGATTATCTCTAAATTGTATCAACAAATTCATGATACAGAAGCTGAGCTGGCCAAAATCCAAACTCAGATTGCTTGTCATAAGCTCCAAAATCAACAATATGAAGCTGGATCAAACTTCAACCTTTTGCCTCCACAAAGTAGCAGCATGGAGCAGTTTCAATGGCCTAATCAAACTCCTAATTGGTTCAATTAA 438 0.379 MIYGRCAACKSQRRRCPSDCIFSPYFPANNPQRFASVHKIYGGGNVGKMLQQLPHYVREQAANTLYLEAQCRIQNPVYGCVGIISKLYQQIHDTEAELAKIQTQIACHKLQNQQYEAGSNFNLLPPQSSSMEQFQWPNQTPNWFN* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3295 145 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 116 - -
Mtr5g3295 145 Coils Coil 84 111 - -
Mtr5g3295 145 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
Mtr5g3295 145 PANTHER LOB DOMAIN-CONTAINING PROTEIN 23-RELATED 1 116 - -
Mtr5g3295 145 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3295 Mtr-Chr5 41796105 41796676 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3295 5 106 AS2 family AT3G26660 64.706 8.74e-47 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr5g3295 LOB 2.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3295 - - gmx:100790640 227.254