Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3288 ATGCCCTCAGCTCAAGATCCATTTTACGTTGTCAAAGAAGATATTCAAGATTCTATTGATAGGTTGCAATCTAATTTTCACCAATGGGAGAACACTTCTGATACTGGTGAGCATTTGAACCTTTCAAAGGAAGTTCTTGCTGCTTGTGGAAGTATTGAGTGGCAGGTGGATGAATTGGACAAAGCAATTTCTGTAGCATCTAGAGATCCTTCTTGGTATGGCATTGATGAAGTGGAGATTGAAAACCGGAGGAGGTGGACCAGCAATGCTCGCACCCAGGTGCGCACAATTAAGAGAACAGTGGAAGCTGGAAAGGGATCAAATCCAACAACTCATGCTAGTATAAGTGGGATGCACAGGGAATTAATGAGGCTTCCAGATTCTCATCAAAGTACGTCTAAGTCTAACCAATATGCCTCTGGGGATAATGATGATTTCATAGAATCAGAATCAGATAGGCAAATGCTTCTTATAAAGCAGCAGGACGAGGAGTTAGACGAGCTTAGTTTAAGTGTACAGAGAATCGGAGGTGTTGGACTTACAATACATGAAGAGCTCCTTGGGCAGGAAAAGATTCTAGATGAACTGGGAAATGAGATGGACAGTACATCCAATCGTTTAGATTTTGTCCAAAAAAGAGTGGCAATGGTGATGAAGAAGGCCAGTGCAAAGGGGCAGATGATGATGATATGTGGTTTGCTGGCCCTGTTCATTTTCCTTTTTATCTTGGTATTCTTCACTTAG 744 0.4194 MPSAQDPFYVVKEDIQDSIDRLQSNFHQWENTSDTGEHLNLSKEVLAACGSIEWQVDELDKAISVASRDPSWYGIDEVEIENRRRWTSNARTQVRTIKRTVEAGKGSNPTTHASISGMHRELMRLPDSHQSTSKSNQYASGDNDDFIESESDRQMLLIKQQDEELDELSLSVQRIGGVGLTIHEELLGQEKILDELGNEMDSTSNRLDFVQKRVAMVMKKASAKGQMMMICGLLALFIFLFILVFFT* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3288 247 MobiDBLite consensus disorder prediction 128 144 - -
Mtr5g3288 247 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Mtr5g3288 247 SUPERFAMILY t-snare proteins 5 101 IPR010989 GO:0016020|GO:0016192
Mtr5g3288 247 PANTHER SYNTAXIN PROTEIN 1 246 - -
Mtr5g3288 247 Coils Coil 12 32 - -
Mtr5g3288 247 Gene3D - 2 104 - -
Mtr5g3288 247 Pfam SNARE domain 192 243 IPR000727 -
Mtr5g3288 247 CDD SNARE_Qc 158 215 - -
Mtr5g3288 247 Gene3D - 162 226 - -
Mtr5g3288 247 SUPERFAMILY SNARE fusion complex 153 217 - -
Mtr5g3288 247 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 155 217 IPR000727 -
Mtr5g3288 247 MobiDBLite consensus disorder prediction 126 145 - -
Mtr5g3288 247 Coils Coil 193 213 - -
Mtr5g3288 247 PANTHER SYNTAXIN 1 246 IPR045242 -
Mtr5g3288 247 SMART tSNARE_6 150 217 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3288 Mtr-Chr5 41738473 41743339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3288 55 247 SNARE and Associated Proteins AT1G28490 70.466 1.81e-95 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3288 K08500 - gmx:100795447 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1295 3 23872063 23876422 Mtr5g3288 5 41738473 41743339 PCT