Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3283 ATGACTATTACCATCACTTCACTAACTATGAACAAATGGTTTTCTAGAACAATAGAGGCAATAACAAAGTGTCAAGAAGTTCTTTTTAATAGTTCTGCATTTGAGAAATTCATGAAAGCCATGGAGAGATTTCTTTTTGCTGCATTCACTTGCATTTTAGCACTAGGAGGGTCAATAATAGGAACAATAGCAGGAGCTATCAAAGGTCAGACCACAGAAACTGGTTTTCTTGATGGAGCTGGAAAAGGAGCAATTGCAGGAGCCATTGCAGCCATAGAACTGATGAGTTTTGCTTCTGTGGCTGAGCCATTTTCCAAGGTTGCGTTGTTGAGAAGTTTATTAAATGGGAAAGTGTTTATGGAATGGATATGTCCAACTGTTGCACAAGCTTATTTGTTTTATATAAATTCACTAGAAACAGCTTATGGAGCAGTGCTTTCAGATATTTATGACGACTTGGGAGTTAAGGGGATGCAACAAAGTTGTATTATGAAGCTTCCATGTCAGCAATTCAGCTCCAACAAAATGATGAAATTATACAATGAATCATGTTGCTCAATTTGCATCCAGGATTTTGAGAATGAAGAATTGGTGAGATTACTTCCAAAATGTAGCCACATTTTTCATTTAGAGTGCATTGACAAGTGGCTAGTACAACAAGGATCATGTCCTATTTGTAGAACTTACGTTCCTGACCATATTAATTCGTGA 711 0.3699 MTITITSLTMNKWFSRTIEAITKCQEVLFNSSAFEKFMKAMERFLFAAFTCILALGGSIIGTIAGAIKGQTTETGFLDGAGKGAIAGAIAAIELMSFASVAEPFSKVALLRSLLNGKVFMEWICPTVAQAYLFYINSLETAYGAVLSDIYDDLGVKGMQQSCIMKLPCQQFSSNKMMKLYNESCCSICIQDFENEELVRLLPKCSHIFHLECIDKWLVQQGSCPICRTYVPDHINS* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3283 236 SMART ring_2 185 226 IPR001841 -
Mtr5g3283 236 CDD RING-H2_PA-TM-RING 184 227 - -
Mtr5g3283 236 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 21 230 - -
Mtr5g3283 236 SUPERFAMILY RING/U-box 178 232 - -
Mtr5g3283 236 Pfam Ring finger domain 185 227 IPR001841 -
Mtr5g3283 236 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 21 230 IPR044523 -
Mtr5g3283 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 233 IPR013083 -
Mtr5g3283 236 ProSiteProfiles Zinc finger RING-type profile. 185 227 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3283 Mtr-Chr5 41707802 41709389 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3283 33 230 C3H Transcription Factor Family AT5G66070 33.654 1.46e-34 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3283 - K19041 gmx:100305612 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3283 5 41707802 41709389 Mtr5g3283 5 41707802 41709389 ECH