Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3282 ATGGCTATTACCATCACTTCACTAACTATGACAAGATATTTTTCTGGAACAATAGAAGCAATAACTAAGTGTAAGGAAGTTCTTTCTTTGAAGGCATTGAATGCCATTGGATGTTCTGTATTTGAGCAATTCATGAACGTTCTGGAGAAGGTTCTTTTTGCTACATTCACCTGCATTTTAGCACTAGGAGGGTCGATAATAGGAACTATAACAGGAGCTATCAAAGGACAAACCACAGAAGTTGGTTTTCTTGATGGAGCTGGCAAAGGAGCGATTGCAGGAGCCATTGCAGCCATAGAATTTATGAGTTTTGCTTATGTGGCCGTGGGTGAGCCATTTTCCAAGGTTGCTTTGTTGAGAAGTTTACTAAATGGAAAAGTATTTACGGAATGGATATGTCCAACTGTTGCAGAAGCTTATTTGTTTTATATAAATTCACTAGAAACAGGTTATGAAGGAGTGCTTTCAGATATGTATGACAACATGGGAGTTAAAGGGATGCCACATAGTTGTATTATGAAGCTTCCATTCCAGCAATTCTGCTCCAACAAAATGATGAAATTATACAATGAGTCATGCTGCTCAATTTGCTTACAGGATTTTGAGAATGAAGAATTGGTCAGAATACTTCCAAAATGTAGCCATATTTTTCATTTAGAATGCATTGACAAGTGGCTAATCCAACAAGGATCATGTCCCATTTGTAGAACTTATGTTGTTGATCACATTAATTCGTGA 738 0.3713 MAITITSLTMTRYFSGTIEAITKCKEVLSLKALNAIGCSVFEQFMNVLEKVLFATFTCILALGGSIIGTITGAIKGQTTEVGFLDGAGKGAIAGAIAAIEFMSFAYVAVGEPFSKVALLRSLLNGKVFTEWICPTVAEAYLFYINSLETGYEGVLSDMYDNMGVKGMPHSCIMKLPFQQFCSNKMMKLYNESCCSICLQDFENEELVRILPKCSHIFHLECIDKWLIQQGSCPICRTYVVDHINS* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3282 245 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 16 239 - -
Mtr5g3282 245 SMART ring_2 194 235 IPR001841 -
Mtr5g3282 245 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 16 239 IPR044523 -
Mtr5g3282 245 SUPERFAMILY RING/U-box 187 241 - -
Mtr5g3282 245 CDD RING-H2_PA-TM-RING 193 236 - -
Mtr5g3282 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 240 IPR013083 -
Mtr5g3282 245 Pfam Ring finger domain 194 236 IPR001841 -
Mtr5g3282 245 ProSiteProfiles Zinc finger RING-type profile. 194 236 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3282 Mtr-Chr5 41696578 41700608 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3282 47 239 C3H Transcription Factor Family AT5G66070 34.314 4.54e-36 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3282 - K19041 gmx:100305612 264.233