Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3279 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACTATCACCCTCGAGGTTGAGAGCAGCGACACAATCGACAACGTCAAGGCCAAGATCCAGGACAAAGAAGGTATCCCTCCTGACCAGCAAAGGTTGATTTTTGCGGGTAAGCAACTGGAAGATGGACGTACTCTTGCTGATTACAACATACAAAAGGAATCAACACTTCACTTGGTACTCAGGCTCAGAGGAGGAACCATGATTAAAGTCAAGACTTTGACCGGTAAAGAGATTGAAATTGACATTGAGCCTACTGATACTATTGATCGTATCAAGGAACGTGTTGAAGAAAAAGAGGGTATTCCACCTGTGCAGCAAAGGCTCATCTATGCTGGTAAGCAGCTTGCTGATGACAAAACAGCTAAAGAGTACAACATTGAGGGTGGTTCTGTGCTTCACTTGGTGCTTGCATTGAGGGGTGGTAATTAG 462 0.4481 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGGN* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3279 153 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Mtr5g3279 153 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Mtr5g3279 153 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Mtr5g3279 153 PANTHER UBIQUITIN 1 152 - -
Mtr5g3279 153 PANTHER - 1 152 - -
Mtr5g3279 153 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Mtr5g3279 153 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Mtr5g3279 153 PRINTS Ubiquitin signature 11 31 IPR019956 -
Mtr5g3279 153 PRINTS Ubiquitin signature 32 52 IPR019956 -
Mtr5g3279 153 PRINTS Ubiquitin signature 53 74 IPR019956 -
Mtr5g3279 153 CDD Ubl_NEDD8 79 152 IPR038738 -
Mtr5g3279 153 CDD Ubl_ubiquitin 1 76 - -
Mtr5g3279 153 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Mtr5g3279 153 SMART ubq_7 77 148 IPR000626 GO:0005515
Mtr5g3279 153 SMART ubq_7 1 72 IPR000626 GO:0005515
Mtr5g3279 153 SUPERFAMILY Ubiquitin-like 78 152 IPR029071 -
Mtr5g3279 153 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Mtr5g3279 153 Gene3D - 78 153 - -
Mtr5g3279 153 Gene3D - 1 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3279 Mtr-Chr5 41680499 41681799 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3279 1 76 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 2.11e-50 155