Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3272 ATGAGAAAACCTAAACCATCAAAGCAATTTCGAAAACAACAACGCGACTCAGAACTAGACAAAATCAACCTCTTGAATTCATGGATTCAATCTCAAAAACCAGACTCCGGTTCAAACCCAATGTCTCTTCCACCTCTCCCCAAAAACTCCCCCGTTGGCCGCCTCGCCGACGGAACGTTCTCACGCTATGCCGGCGTGGTGCGGTTTGATCAGTTACCGATATCGAAGAAAACCAAAGACGGATTGATATCGAAGAAAACCCAAGACGAATTGCATTCGAAATTCGTTTCCATGACTAAAATTCAACGAGCTTCTCTTCCTCATGCGCTTTGTGGCCGTGATGTTCTTGGTGCCGCCAAAACTGGTTCTGGAAAAACACTTGCTTTCATTATTCCTGTGTTGGAGAAATTGCATAGAGAGAGATGGGGAACGGAAGATGGGGTTGGGAGCATAATCATATCACCTACAAGAGAATTAGCTGGTCAGATTTTTGGCGTGTTGAATGCTATTGGGGAGCACCATCGTTTTAGTGCTGGCCTCCTCATTGGTGGTGGTGGGGATGTTGCCATTGAGAAAGAATGTGTCAACAAGCTAAACATATTGATCTGCACACCCGGTCGCCTTCTACAACACATGGATGAAACTCCCAATTTTGATTGTTCACAGATGCAGGTTTTGGTACTAGATGAGGCTGACCGTATTCTTGATAGTGGATTCAAGAAGGAAGTAAATGCAATCATCTCACAGTTACCAAAGCGTAGACAAACCATGCTTTTCTCGGCAACTCAAACAAAGTCGGTTCAAGATCTTGCAAGACTAAGTTTGAAGGACCCAGAGTATATAAGTGTGCACGAAGAGTCTGTGACTGCAACTCCTACTCTTTTGAAGCAAACGGTGATGATCGTTCCCCTGGATCAAAAGTTAGATATGCTATGGACTTTCATAAAGAGACATCTACAGTCAAAAACACTTGTCTTTCTATCAAGCTGTAAACAGGTAAAGTTTGTGTTTGAGGTATTTAAGAAACTTCACCCTGGCATACCGTTGAAGTGCCTTCATGGGAGGATGAAACAGGAAAAAAGAATGGCAATATATTCCGAGTTCTGTGAGGAGAAGCGCTCAGTTCTCTTCTCAACTGATGTGGCTGCAAGAGGCCTTGATTTTAATAAGGCAGTCGACTGGGTTGTTCAGGTAGATTGTCCCGAGAATGTAGCATCTTACATACATCGAGTTGGTCGTACTGCTCGTTATAACTCTGTTGGAAAGTCAGTTTTATTTCTATTGCCTTCAGAAACTATGATGCATGAAAAGTTAAAAGCAGCAAAGGTTCCAGTTCATTGTCAGAAGCCAAGGAAAGAACTGCTGCAACCAGTGTCCAGTTTGCTTGCATCTTTACTGGTCAAGTACCCAGAACTTCAGCAGCGGGCCCAAAGGGCATTTGTCACATACTTGAGATCCATCCACCTCCAAAAAGATAAAGAGATCTTTGATGTTTTGAAACTTCCTATTGATGAGTATTCAGCATCATTAGGTCTGCCAATGACCCCCAAAATCCGTTTTCTAAACCAGAAAATTAAATCTAAAGCTGTGGCAACAAAATCAATTTTAGTTGAACCTGAGGTTCCAAAAAAGGAAAATGTTTTTGAAGGTTCAAGAAAAAAGATAGACACAATTGTTTTCAAAGACGAGGAAATTGAAAACGATCTTCTTCATGTGGCTGATACCTCAAATGAAGGCGACGTGAAGTCAGCTGAAATTGGAGAGTTAATGCCAGCAACTCGTTTATTAAAGAAAAAAAAGCTCAAGATTAACACGCATAGACCACTGGGGAGTCGGGTTGTATTCGACGATGAAGGCAACACACTTCCTCCACTAGCCAGGATTGCTGACCCACAAAGTGGCAATGGAACATTGATTGATCCAGAACAAAAAGCTGAATACTATAAAAGGATGCGAGAGGATTTGAAGAAGGCAGACAAGGAAGATAAACTTGTGGAGCGTCAGCGACTTAGAGATAAAAAATTTAAGCAGAAAATGAAATGGAAGGCTGGTAATGAGGAAGAAGAGGACAACCAAGATGATACCTCTGGGTCAGAAGGAGACGAACCGATAAATAGACGTCATAAAAAGAGTAAAATATACTTTGACAGTGACAGTGATGAGGGTCAAAGAAAAGAAGCTTCAAGAAGACAAACGGAAGATCAAGAAGAGTTGGCTTTGAAGTTGTTACAATCCATGCACTGA 2244 0.4193 MRKPKPSKQFRKQQRDSELDKINLLNSWIQSQKPDSGSNPMSLPPLPKNSPVGRLADGTFSRYAGVVRFDQLPISKKTKDGLISKKTQDELHSKFVSMTKIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEKLHRERWGTEDGVGSIIISPTRELAGQIFGVLNAIGEHHRFSAGLLIGGGGDVAIEKECVNKLNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKEVNAIISQLPKRRQTMLFSATQTKSVQDLARLSLKDPEYISVHEESVTATPTLLKQTVMIVPLDQKLDMLWTFIKRHLQSKTLVFLSSCKQVKFVFEVFKKLHPGIPLKCLHGRMKQEKRMAIYSEFCEEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYNSVGKSVLFLLPSETMMHEKLKAAKVPVHCQKPRKELLQPVSSLLASLLVKYPELQQRAQRAFVTYLRSIHLQKDKEIFDVLKLPIDEYSASLGLPMTPKIRFLNQKIKSKAVATKSILVEPEVPKKENVFEGSRKKIDTIVFKDEEIENDLLHVADTSNEGDVKSAEIGELMPATRLLKKKKLKINTHRPLGSRVVFDDEGNTLPPLARIADPQSGNGTLIDPEQKAEYYKRMREDLKKADKEDKLVERQRLRDKKFKQKMKWKAGNEEEEDNQDDTSGSEGDEPINRRHKKSKIYFDSDSDEGQRKEASRRQTEDQEELALKLLQSMH* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3272 747 PANTHER ATP-DEPENDENT RNA HELICASE DDX10-RELATED 58 547 - -
Mtr5g3272 747 Gene3D - 59 287 IPR027417 -
Mtr5g3272 747 MobiDBLite consensus disorder prediction 699 737 - -
Mtr5g3272 747 CDD SF2_C_DEAD 295 427 - -
Mtr5g3272 747 SMART DUF4217_3 457 520 IPR025313 -
Mtr5g3272 747 MobiDBLite consensus disorder prediction 624 643 - -
Mtr5g3272 747 Coils Coil 648 668 - -
Mtr5g3272 747 MobiDBLite consensus disorder prediction 675 747 - -
Mtr5g3272 747 SMART helicmild6 334 418 IPR001650 -
Mtr5g3272 747 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 106 281 IPR014001 -
Mtr5g3272 747 CDD DEADc_DDX10 93 284 - -
Mtr5g3272 747 Pfam Domain of unknown function (DUF4217) 461 518 IPR025313 -
Mtr5g3272 747 Pfam DEAD/DEAH box helicase 99 270 IPR011545 GO:0003676|GO:0005524
Mtr5g3272 747 PANTHER RNA HELICASE 58 547 - -
Mtr5g3272 747 MobiDBLite consensus disorder prediction 29 54 - -
Mtr5g3272 747 Gene3D - 293 537 IPR027417 -
Mtr5g3272 747 Pfam Helicase conserved C-terminal domain 307 418 IPR001650 -
Mtr5g3272 747 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 436 IPR027417 -
Mtr5g3272 747 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 303 466 IPR001650 -
Mtr5g3272 747 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 227 235 IPR000629 -
Mtr5g3272 747 SMART ultradead3 94 298 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3272 Mtr-Chr5 41610233 41616504 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3272 102 427 Eukaryotic Initiation Factors Gene Family AT3G19760 30.909 8.45e-36 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3272 K14776 - gmx:100792106 1191.02