Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3258 ATGTGGCAAAAATTCTTTCAAGCCAAAATTCATAGGATCAATTTTGTTTTTATGATGGGCAAAGATCAAATATTTAGGGGGTGGAAAATGAGCTTTTTTGCATGTTGTAAGTCACAAGAGAAGAACACCAAGAACACATTGAAGAAAAGCATTAAGGACTATCATAACATTTGTTCTAAATCTGATGGTGGCAAACGGAAGTACATAGCAGAGGAAGAAAACACAAGAAATGGAAAAGGAAATATTACCTCTAAGATATTTTCTTACCATGAGCTATGTGTTGCAACTAAGAATTTTCATATCAACAATATGATTGGTGAAGGAGGCTTTGGGAGAGTATACAAAGGGCGCATTAAAAGCATAAATAATAAGGTTGTTGCTGTTAAGAAACTTAACAAGGATGGATTTCAAGGAAGCAGGGAATTTCTTGCAGAGGTTATGATTTTGAGTTTCTTGCACCACTCTAACCTTGTCAATTTGGTAGGGTATTGTGCAGAAGGTGATCAAAGGATTTTGGTATATGAATATATGGCGAATGGTTCGTTAGAAGATCACCTTTTTGAGTTACCTCCGGGCAAAAAGCCTTTGGATTGGCACACTAGAATGAAAATTGCAGAAGGTGCGGCGAAAGGACTTGAATACTTACACGCAGAAGCAAAGCCACCGGTGATATATCGTGATTTCAAAGCATCAAACATACTCTTGGATGAAAATTTCAATCCAAAACTCTCTGATTTTGGACTTGCAAAGCTTGGTCCAACTGGAGATAAAACACACGTGTCCACTAGGGTGATGGGAACTTATGGCTATTGTGCACCTGAGTATGCCTCAACAGGTCAATTGACTACAAGGTCAGATGTTTATAGCTTTGGAGTGGTGTTTCTAGAGATGATTACTGGGAGAAGAGTACTTGATTCTTCAAGATCGCCTGAAGAAGAAAACTTGGTCATTTGGGCACTACCACTACTCAAAAACAAAAGAAAATATACATCAATGGTTGATCCATTGCTAAAAGGGAACTATCCAATGAGGGGTCTATTCCAAGCACTAGCAATTGCAGCAATGTGTCTATTGGAGGATGCTAATGCTCGACCTTTGATTGGTGATGTAGTTACAGCTCTTGAAGTTTTAGCAATGAGGCATGTACAAGTGGGTAAACAAAAACATACAAAAGAAACTTCTATTGAGAAAGGAGAATGCAGTTGA 1206 0.3814 MWQKFFQAKIHRINFVFMMGKDQIFRGWKMSFFACCKSQEKNTKNTLKKSIKDYHNICSKSDGGKRKYIAEEENTRNGKGNITSKIFSYHELCVATKNFHINNMIGEGGFGRVYKGRIKSINNKVVAVKKLNKDGFQGSREFLAEVMILSFLHHSNLVNLVGYCAEGDQRILVYEYMANGSLEDHLFELPPGKKPLDWHTRMKIAEGAAKGLEYLHAEAKPPVIYRDFKASNILLDENFNPKLSDFGLAKLGPTGDKTHVSTRVMGTYGYCAPEYASTGQLTTRSDVYSFGVVFLEMITGRRVLDSSRSPEEENLVIWALPLLKNKRKYTSMVDPLLKGNYPMRGLFQALAIAAMCLLEDANARPLIGDVVTALEVLAMRHVQVGKQKHTKETSIEKGECS* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3258 401 Gene3D Phosphorylase Kinase; domain 1 69 176 - -
Mtr5g3258 401 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Mtr5g3258 401 Gene3D Transferase(Phosphotransferase) domain 1 177 399 - -
Mtr5g3258 401 ProSitePatterns Protein kinases ATP-binding region signature. 105 130 IPR017441 GO:0005524
Mtr5g3258 401 PANTHER RECEPTOR SERINE/THREONINE KINASE 30 401 - -
Mtr5g3258 401 ProSiteProfiles Protein kinase domain profile. 99 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g3258 401 SUPERFAMILY Protein kinase-like (PK-like) 82 376 IPR011009 -
Mtr5g3258 401 CDD STKc_IRAK 105 375 - -
Mtr5g3258 401 PANTHER OS07G0668900 PROTEIN 30 401 - -
Mtr5g3258 401 Pfam Protein kinase domain 99 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3258 Mtr-Chr5 41412725 41415670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3258 81 377 Glycoside Hydrolase AT3G07070 64.310 1.98e-144 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Mtr5g3258 Pkinase 2.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3258 - - gmx:100798032 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3258 5 41412725 41415670 Mtr5g3258 5 41412725 41415670 ECH
Mtr3g1256 3 23212477 23215401 Mtr5g3258 5 41412725 41415670 PCT