Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3227 ATGTTTGGTGAAATGGAACACAAGCAAGAACAAGACAATGGTAACCAAAATAATAATATGTCTGGTAATGGTATTGATGTTACCCTAATGTCTCCTAAAATTCCAAAATCAGTTTCACCAGTTTCTTCTGCAGCTGAGGGGGAAACCTTAAAGCGGCCTCGTGGTCGGCCAGCTGGATCAAAAAACAAGCCTAAGCCACCTATTATTGTCACCAGAGATAGTGCTAATGCACTGAAAGCTCATGCTATGGAAGTAAGCTCCGGGTGTGATGTGAATGAGAGTTTGTTGAACTTTGCAAGGAGAAAGCAGCGTGGTCTTTGTATACTTAATGGCACCGGTTGTGTCACGAATGTAACGCTGCGCCAACCAGCTTCTTCTGGTGCCATTGTGACCCTTCATGGTCGATTCGAGATTCTCTCATTGTTGGGCTCAATTCTTCCGCCACCTGCACCACCAGGAATCACTGGTCTTACAATTTATTTAGCGGGTGCTCAAGGACAAGTTGTTGGAGGTGCTGTAGTTGGTGCTTTGATTGCTTCAGGACCTGTTGTGATCATGGCTGCATCATTCATGCATGCTACTTTCGATCGTCTGCCACTGGAAGACGATGAACTTGCTGCTGCAATGCAGAATCAGCATTACCAAAATGGACGCGCGGCACAACATCATCTCGATATCTCTGACTTATATGCAATGCCGCAAAACCTCCTCATGAATGGTGCAATGCCACCTGAGATATACTCTTGGGCACCGGGTCGAAACTTGTCAAAAACCTGA 777 0.4569 MFGEMEHKQEQDNGNQNNNMSGNGIDVTLMSPKIPKSVSPVSSAAEGETLKRPRGRPAGSKNKPKPPIIVTRDSANALKAHAMEVSSGCDVNESLLNFARRKQRGLCILNGTGCVTNVTLRQPASSGAIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGAVVGALIASGPVVIMAASFMHATFDRLPLEDDELAAAMQNQHYQNGRAAQHHLDISDLYAMPQNLLMNGAMPPEIYSWAPGRNLSKT* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3227 258 Pfam Plants and Prokaryotes Conserved (PCC) domain 80 190 IPR005175 -
Mtr5g3227 258 MobiDBLite consensus disorder prediction 1 69 - -
Mtr5g3227 258 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 10 257 IPR014476 GO:0003680
Mtr5g3227 258 PIRSF ESCAROLA 2 253 IPR014476 GO:0003680
Mtr5g3227 258 SUPERFAMILY AF0104/ALDC/Ptd012-like 75 207 - -
Mtr5g3227 258 Gene3D - 77 220 - -
Mtr5g3227 258 MobiDBLite consensus disorder prediction 12 26 - -
Mtr5g3227 258 ProSiteProfiles PPC domain profile profile. 75 213 IPR005175 -
Mtr5g3227 258 CDD DUF296 81 161 IPR005175 -
Mtr5g3227 258 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 16 10 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3227 Mtr-Chr5 41147769 41149022 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3227 5 257 AT-hook Motif Nuclear Localized (AHL) Family AT2G42940 67.451 5.00e-106 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3227 - - gmx:100804941 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3227 5 41147769 41149022 Mtr5g3227 5 41147769 41149022 ECH