Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3223 ATGCAGGAGCCTCTCCTCAGCCTTCTCTCCAGTAATGGAGAAACACATTCAATAAGTAAACCATTACTCAAGGATCAATATGTCCTTGATCTTGCTCCTCCATCACTGTCTCAATCAAATTCACCTCTTATCATCAATGAAGCGAGGAAACCTTCTTTTATTAACCTCATAGCCAACTTGAGCATCAAGAAAGCGAAGATTATTCATCGCTCTCGCTCTGCTCCATCAGTATTATTCACCAACATGGGAGTAGATTTTCATGAGCCATCTGATCATGGACCTGCACAGAACTCAATAATAGTTAGGCTATGTTTCATTATTGTTTTCTTGTATGTGGCTATTGGGGTTACAGTGTATATGATTAGTGGAAGTTTCAAGGGTACTACCACATTCAGGCCTGTTGATGCTGTGTACTTTACAGTGGTAACTCTATGCACTATTGGATATGGAGATATTGTTCCTGATACTATATTTACAAAGATGTTTACATGTGGTTTCATTTTGGTTGGTTTTGGATTAATCGGTTTTATGCTTAATGAGTTAGTTGTACATATTTGTGATACACATGAGGCATTCTTATTGAGCATGATGGGTGGGGATAAATATAAGAAAATTTTGAGGACTTACATGGTTGATGAAAAGAAAGGAAGAATGAGGATAAGAACCAAAGTTTGTGTTGCTTTGGTTGTTGTTATTGTCTGCATTGCTATTGGAACAGTTACAGCACACTTTGTAGAGAATCTGAATTGGGCTGACAGTTTTTATCTCTCCATTACTTCTGTTACAACGGTTGGTTATGGAGATTATTCATTCAGAACTTTAACTGGAAGATGTTTCGCAATTTTGTGGCTTTTAGTTAGCACATTTTCAGTTTCAAGGGCGTTTATATACCTCACCGATTACAGCATGCAAAAGAGAAGCCGCAAAATGGCAAAAATGGTTCTTCAGAAGAAGATAACCTTATCAGATTTAGCAGCTGCAGATCTTGATAATGATGGATCTATCAGTAAGTCTGACTTTGTCATATACAAGCTTAAGCAAATGGGAAAGATTACTGAGATGGACATTATGCAGATTAGCAAGCAATTTGATTCCTTGGACCATGGCATGTATGGCAAGATAGCTCTAGCTGACCTCATGGAAACTGTCTAA 1152 0.3776 MQEPLLSLLSSNGETHSISKPLLKDQYVLDLAPPSLSQSNSPLIINEARKPSFINLIANLSIKKAKIIHRSRSAPSVLFTNMGVDFHEPSDHGPAQNSIIVRLCFIIVFLYVAIGVTVYMISGSFKGTTTFRPVDAVYFTVVTLCTIGYGDIVPDTIFTKMFTCGFILVGFGLIGFMLNELVVHICDTHEAFLLSMMGGDKYKKILRTYMVDEKKGRMRIRTKVCVALVVVIVCIAIGTVTAHFVENLNWADSFYLSITSVTTVGYGDYSFRTLTGRCFAILWLLVSTFSVSRAFIYLTDYSMQKRSRKMAKMVLQKKITLSDLAAADLDNDGSISKSDFVIYKLKQMGKITEMDIMQISKQFDSLDHGMYGKIALADLMETV* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3223 383 Pfam Ion channel 230 292 IPR013099 -
Mtr5g3223 383 Pfam Ion channel 106 182 IPR013099 -
Mtr5g3223 383 SUPERFAMILY Voltage-gated potassium channels 99 182 - -
Mtr5g3223 383 SUPERFAMILY Voltage-gated potassium channels 204 318 - -
Mtr5g3223 383 Gene3D - 191 328 - -
Mtr5g3223 383 PRINTS Two pore domain K+ channel signature 142 170 IPR003280 GO:0005267|GO:0016020|GO:0071805
Mtr5g3223 383 PRINTS Two pore domain K+ channel signature 262 271 IPR003280 GO:0005267|GO:0016020|GO:0071805
Mtr5g3223 383 Gene3D - 93 190 - -
Mtr5g3223 383 PANTHER OS01G0696100 PROTEIN 48 378 - -
Mtr5g3223 383 ProSitePatterns EF-hand calcium-binding domain. 328 340 IPR018247 -
Mtr5g3223 383 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 48 378 IPR003280 GO:0005267|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3223 Mtr-Chr5 41108374 41110640 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3223 64 381 Ion Channels AT4G18160 47.040 3.31e-102 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3223 K05389 - gmx:100789639 517.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3223 5 41108374 41110640 Mtr5g3223 5 41108374 41110640 ECH