LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr5g3223	ATGCAGGAGCCTCTCCTCAGCCTTCTCTCCAGTAATGGAGAAACACATTCAATAAGTAAACCATTACTCAAGGATCAATATGTCCTTGATCTTGCTCCTCCATCACTGTCTCAATCAAATTCACCTCTTATCATCAATGAAGCGAGGAAACCTTCTTTTATTAACCTCATAGCCAACTTGAGCATCAAGAAAGCGAAGATTATTCATCGCTCTCGCTCTGCTCCATCAGTATTATTCACCAACATGGGAGTAGATTTTCATGAGCCATCTGATCATGGACCTGCACAGAACTCAATAATAGTTAGGCTATGTTTCATTATTGTTTTCTTGTATGTGGCTATTGGGGTTACAGTGTATATGATTAGTGGAAGTTTCAAGGGTACTACCACATTCAGGCCTGTTGATGCTGTGTACTTTACAGTGGTAACTCTATGCACTATTGGATATGGAGATATTGTTCCTGATACTATATTTACAAAGATGTTTACATGTGGTTTCATTTTGGTTGGTTTTGGATTAATCGGTTTTATGCTTAATGAGTTAGTTGTACATATTTGTGATACACATGAGGCATTCTTATTGAGCATGATGGGTGGGGATAAATATAAGAAAATTTTGAGGACTTACATGGTTGATGAAAAGAAAGGAAGAATGAGGATAAGAACCAAAGTTTGTGTTGCTTTGGTTGTTGTTATTGTCTGCATTGCTATTGGAACAGTTACAGCACACTTTGTAGAGAATCTGAATTGGGCTGACAGTTTTTATCTCTCCATTACTTCTGTTACAACGGTTGGTTATGGAGATTATTCATTCAGAACTTTAACTGGAAGATGTTTCGCAATTTTGTGGCTTTTAGTTAGCACATTTTCAGTTTCAAGGGCGTTTATATACCTCACCGATTACAGCATGCAAAAGAGAAGCCGCAAAATGGCAAAAATGGTTCTTCAGAAGAAGATAACCTTATCAGATTTAGCAGCTGCAGATCTTGATAATGATGGATCTATCAGTAAGTCTGACTTTGTCATATACAAGCTTAAGCAAATGGGAAAGATTACTGAGATGGACATTATGCAGATTAGCAAGCAATTTGATTCCTTGGACCATGGCATGTATGGCAAGATAGCTCTAGCTGACCTCATGGAAACTGTCTAA	1152	0.3776	MQEPLLSLLSSNGETHSISKPLLKDQYVLDLAPPSLSQSNSPLIINEARKPSFINLIANLSIKKAKIIHRSRSAPSVLFTNMGVDFHEPSDHGPAQNSIIVRLCFIIVFLYVAIGVTVYMISGSFKGTTTFRPVDAVYFTVVTLCTIGYGDIVPDTIFTKMFTCGFILVGFGLIGFMLNELVVHICDTHEAFLLSMMGGDKYKKILRTYMVDEKKGRMRIRTKVCVALVVVIVCIAIGTVTAHFVENLNWADSFYLSITSVTTVGYGDYSFRTLTGRCFAILWLLVSTFSVSRAFIYLTDYSMQKRSRKMAKMVLQKKITLSDLAAADLDNDGSISKSDFVIYKLKQMGKITEMDIMQISKQFDSLDHGMYGKIALADLMETV*	384

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Mtr5g3223	383	Pfam	Ion channel	230	292	IPR013099	-
Mtr5g3223	383	Pfam	Ion channel	106	182	IPR013099	-
Mtr5g3223	383	SUPERFAMILY	Voltage-gated potassium channels	99	182	-	-
Mtr5g3223	383	SUPERFAMILY	Voltage-gated potassium channels	204	318	-	-
Mtr5g3223	383	Gene3D	-	191	328	-	-
Mtr5g3223	383	PRINTS	Two pore domain K+ channel signature	142	170	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
Mtr5g3223	383	PRINTS	Two pore domain K+ channel signature	262	271	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
Mtr5g3223	383	Gene3D	-	93	190	-	-
Mtr5g3223	383	PANTHER	OS01G0696100 PROTEIN	48	378	-	-
Mtr5g3223	383	ProSitePatterns	EF-hand calcium-binding domain.	328	340	IPR018247	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr5g3223	Mtr-Chr5	41108374	41110640	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr5g3223	64	381	Ion Channels	AT4G18160	47.040	3.31e-102	307

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr5g3223	K05389		-	gmx:100789639	517.694

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr5g3223	5	41108374	41110640	Mtr5g3223	5	41108374	41110640	ECH

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