Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3217 ATGGCTAATGAGAATCATGATCCTTTCCATCATGATGAACTCAATCACTCTAACTTTTCATTTTCTCAAAACTTTCAAGGATTTGATCCTTCTTCTCATAGTACAAGTTTCAGTGACTACTTACATGGTTCCATGGACTATAACACCCTATCAAAAGCCTTTGACTTGTCTTGTTCTTCATCTGAAGTGATTTCTTCCATTGATGACAACAACACAAAGAAATCTAGTGCAGGAGATTTATCATCACTAGTAGGGATTAGTGAGACACCAAAATCTTCAGAATCATCCTCATCTAATGAAGCTGTGATAGAAGAAGACTCAACCAACAAGAAAGATAAGCAGCCAAAATTAGGGTGTGAAGATGGAGATGATGAAAAGTCTAAGAAAGAGAACAAGGCTAAAAAGAAAGAGAAAAAGGTAAAAGAGCCAAGGTTTGCATTCTTGACTAAAAGTGAGATTGATCACCTTGAAGATGGATATAGATGGAGAAAATATGGACAGAAAGCAGTCAAGAATAGTCCGTACCCAAGGAGCTATTATAGATGCACAAGTCAGAAGTGCATTGTGAAGAAAAGGGTGGAGAGATCATACCAAGATCCATCAATTGTGATGACAACATATGAAGGACAACACAACCATCACTGTCCAGCAACACTTAGGGGTAATGCTTCCTCCATGTTGTTGTCATCATCACCATCTCTTTTTGCTTCCAGTACTTCAATGGGATTGGAGCAAAGATTACACCAAGATTTCTTTTCTCAGTTTCTTCCAACTTATAGCCAAAGTGATCAACAAATTTTCCACCAAAATCTTCCACAACCTCATCAGCAACAGCAACAACAACAACACCAGCAGCAGTTTCAACTTCGTCGTGACTATGGTTTGTTGCAAGACTTACTACCATCATCATTTCCTGGAAAACAAGAGCCTTGA 933 0.3837 MANENHDPFHHDELNHSNFSFSQNFQGFDPSSHSTSFSDYLHGSMDYNTLSKAFDLSCSSSEVISSIDDNNTKKSSAGDLSSLVGISETPKSSESSSSNEAVIEEDSTNKKDKQPKLGCEDGDDEKSKKENKAKKKEKKVKEPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCIVKKRVERSYQDPSIVMTTYEGQHNHHCPATLRGNASSMLLSSSPSLFASSTSMGLEQRLHQDFFSQFLPTYSQSDQQIFHQNLPQPHQQQQQQQHQQQFQLRRDYGLLQDLLPSSFPGKQEP* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3217 310 MobiDBLite consensus disorder prediction 15 38 - -
Mtr5g3217 310 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 21 303 IPR044810 GO:0003700
Mtr5g3217 310 SUPERFAMILY WRKY DNA-binding domain 149 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr5g3217 310 MobiDBLite consensus disorder prediction 66 103 - -
Mtr5g3217 310 PANTHER WRKY TRANSCRIPTION FACTOR 71-RELATED 21 303 - -
Mtr5g3217 310 MobiDBLite consensus disorder prediction 1 38 - -
Mtr5g3217 310 Coils Coil 119 139 - -
Mtr5g3217 310 SMART WRKY_cls 156 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr5g3217 310 MobiDBLite consensus disorder prediction 104 141 - -
Mtr5g3217 310 MobiDBLite consensus disorder prediction 66 141 - -
Mtr5g3217 310 Gene3D WRKY domain 141 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr5g3217 310 ProSiteProfiles WRKY domain profile. 151 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr5g3217 310 Pfam WRKY DNA -binding domain 157 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3217 Mtr-Chr5 41017204 41019961 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3217 22 310 WRKY Transcription Factor Family AT4G18170 44.816 1.31e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mtr5g3217 WRKY 6.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3217 - - aprc:113847247 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3217 5 41017204 41019961 Mtr5g3217 5 41017204 41019961 ECH